Source ID |
Type |
Tax ID |
Position |
MLLT10 |
UCNEbase |
7955 |
24:17688673-17688888 |
Gene | Transcript | Position | Biotype |
Notice (8): Undefined index: CIL_0007JW_0003 [APP/View/Region/show.ctp, line 46]Code Context
<tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007JW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JW_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000078403' => 'myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10',
'ENSG00000136770' => 'DnaJ (Hsp40) homolog, subfamily C, member 1',
'ENSG00000180592' => 'SKI/DACH domain containing 1',
'ENSG00000201390' => 'RNA, U6 small nuclear 1141, pseudogene',
'ENSG00000207347' => 'RNA, U6 small nuclear 306, pseudogene',
'ENSG00000223984' => 'heterogeneous nuclear ribonucleoprotein R pseudogene 1',
'ENSG00000252634' => 'RNA, 7SK small nuclear pseudogene 219',
'ENSG00000279623' => null,
'ENSMUSG00000026740' => 'DnaJ (Hsp40) homolog, subfamily C, member 1',
'ENSMUSG00000026743' => 'myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10',
'ENSMUSG00000054074' => 'SKI/DACH domain containing 1',
'ENSMUSG00000064964' => 'predicted gene, 25147',
'ENSMUSG00000081619' => 'predicted gene 13351',
'ENSMUSG00000083070' => 'predicted gene 13350',
'ENSMUSG00000086340' => 'RIKEN cDNA 1810059C17 gene',
'ENSMUSG00000092814' => 'predicted gene, 23638',
'ENSMUSG00000099050' => 'microRNA 7655'
),
'gene_name_arr' => array(
'ENSG00000078403' => 'MLLT10',
'ENSG00000136770' => 'DNAJC1',
'ENSG00000180592' => 'SKIDA1',
'ENSG00000201390' => 'RNU6-1141P',
'ENSG00000207347' => 'RNU6-306P',
'ENSG00000223984' => 'HNRNPRP1',
'ENSG00000252634' => 'RN7SKP219',
'ENSG00000279623' => 'RP11-399C16.3',
'ENSMUSG00000026740' => 'Dnajc1',
'ENSMUSG00000026743' => 'Mllt10',
'ENSMUSG00000054074' => 'Skida1',
'ENSMUSG00000064964' => 'Gm25147',
'ENSMUSG00000081619' => 'Gm13351',
'ENSMUSG00000083070' => 'Gm13350',
'ENSMUSG00000086340' => '1810059C17Rik',
'ENSMUSG00000092814' => 'Gm23638',
'ENSMUSG00000099050' => 'Mir7655'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 42 => 'Brain',
(int) 56 => 'Breast',
(int) 73 => 'Colon',
(int) 88 => 'Heart',
(int) 99 => 'Kidney',
(int) 113 => 'Liver',
(int) 129 => 'Lung',
(int) 145 => 'Muscle',
(int) 162 => 'Ovary',
(int) 185 => 'Placenta',
(int) 204 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 62,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000307729' => array(
'start' => '21534343',
'end' => '21743630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-002'
),
'ENST00000377059' => array(
'start' => '21534645',
'end' => '21743626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-201'
),
'ENST00000377072' => array(
'start' => '21534173',
'end' => '21743630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-001'
),
'ENST00000377091' => array(
'start' => '21534345',
'end' => '21557025',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-003'
),
'ENST00000377100' => array(
'start' => '21534165',
'end' => '21557182',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-013'
),
'ENST00000420525' => array(
'start' => '21673578',
'end' => '21713922',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-009'
),
'ENST00000430455' => array(
'start' => '21534749',
'end' => '21595378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-004'
),
'ENST00000438473' => array(
'start' => '21651754',
'end' => '21730944',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-007'
),
'ENST00000462999' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-006'
),
'ENST00000468309' => array(
'start' => '21668972',
'end' => '21671014',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-014'
),
'ENST00000471315' => array(
'start' => '21534468',
'end' => '21538964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-005'
),
'ENST00000476557' => array(
'start' => '21534702',
'end' => '21595582',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-012'
),
'ENST00000479634' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-010'
),
'ENST00000480415' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-008'
),
'ENST00000495130' => array(
'start' => '21534490',
'end' => '21612451',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-011'
),
'ENST00000621220' => array(
'start' => '21534645',
'end' => '21556677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-202'
),
'ENST00000376946' => array(
'start' => '21920610',
'end' => '22003769',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAJC1-004'
),
'ENST00000376980' => array(
'start' => '21756537',
'end' => '22003725',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAJC1-001'
),
'ENST00000447548' => array(
'start' => '21919903',
'end' => '22003399',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC1-005'
),
'ENST00000476103' => array(
'start' => '21919889',
'end' => '22003585',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC1-003'
),
'ENST00000483085' => array(
'start' => '21759509',
'end' => '21860906',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC1-002'
),
'ENST00000444772' => array(
'start' => '21515016',
'end' => '21517919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SKIDA1-201'
),
'ENST00000449193' => array(
'start' => '21513478',
'end' => '21525682',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SKIDA1-001'
),
'ENST00000487107' => array(
'start' => '21519508',
'end' => '21523895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SKIDA1-002'
),
'ENST00000364520' => array(
'start' => '21661635',
'end' => '21661741',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1141P-201'
),
'ENST00000384617' => array(
'start' => '21564471',
'end' => '21564577',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-306P-201'
),
'ENST00000453465' => array(
'start' => '21624592',
'end' => '21626286',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HNRNPRP1-001'
),
'ENST00000516825' => array(
'start' => '21785292',
'end' => '21785587',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP219-201'
),
'ENST00000624879' => array(
'start' => '21865335',
'end' => '21865921',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-399C16.3-001'
),
'ENSMUST00000028072' => array(
'start' => '18217135',
'end' => '18392642',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-008'
),
'ENSMUST00000091418' => array(
'start' => '18206333',
'end' => '18392811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-004'
),
'ENSMUST00000148401' => array(
'start' => '18195654',
'end' => '18219557',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-003'
),
'ENSMUST00000153055' => array(
'start' => '18308585',
'end' => '18392824',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnajc1-002'
),
'ENSMUST00000163130' => array(
'start' => '18217135',
'end' => '18392420',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-006'
),
'ENSMUST00000164606' => array(
'start' => '18306638',
'end' => '18310258',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnajc1-007'
),
'ENSMUST00000164835' => array(
'start' => '18219531',
'end' => '18307016',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-011'
),
'ENSMUST00000165793' => array(
'start' => '18316792',
'end' => '18392830',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnajc1-010'
),
'ENSMUST00000166495' => array(
'start' => '18213749',
'end' => '18392830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-001'
),
'ENSMUST00000168723' => array(
'start' => '18217155',
'end' => '18392421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-005'
),
'ENSMUST00000172210' => array(
'start' => '18209229',
'end' => '18216902',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnajc1-009'
),
'ENSMUST00000028076' => array(
'start' => '18055237',
'end' => '18212387',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-201'
),
'ENSMUST00000114669' => array(
'start' => '18126156',
'end' => '18212386',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-003'
),
'ENSMUST00000114671' => array(
'start' => '18064636',
'end' => '18212388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-002'
),
'ENSMUST00000114680' => array(
'start' => '18064687',
'end' => '18210970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-001'
),
'ENSMUST00000133649' => array(
'start' => '18064805',
'end' => '18123812',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-009'
),
'ENSMUST00000148229' => array(
'start' => '18123709',
'end' => '18159590',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-007'
),
'ENSMUST00000149786' => array(
'start' => '18170251',
'end' => '18186857',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-008'
),
'ENSMUST00000150422' => array(
'start' => '18064394',
'end' => '18122348',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-005'
),
'ENSMUST00000153279' => array(
'start' => '18064834',
'end' => '18109891',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-006'
),
'ENSMUST00000154041' => array(
'start' => '18064684',
'end' => '18126229',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-004'
),
'ENSMUST00000155352' => array(
'start' => '18064841',
'end' => '18065255',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-010'
),
'ENSMUST00000066885' => array(
'start' => '18045253',
'end' => '18048449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-201'
),
'ENSMUST00000091420' => array(
'start' => '18044083',
'end' => '18049051',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-001'
),
'ENSMUST00000142856' => array(
'start' => '18047716',
'end' => '18048784',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-003'
),
'ENSMUST00000152908' => array(
'start' => '18048144',
'end' => '18049031',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-002'
),
'ENSMUST00000173604' => array(
'start' => '18040676',
'end' => '18044572',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Skida1-004'
),
'ENSMUST00000083030' => array(
'start' => '18158687',
'end' => '18158791',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25147-201'
),
'ENSMUST00000118087' => array(
'start' => '18179029',
'end' => '18179442',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13351-001'
),
'ENSMUST00000120519' => array(
'start' => '18249365',
'end' => '18249843',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13350-001'
),
'ENSMUST00000125173' => array(
'start' => '18054193',
'end' => '18056613',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '1810059C17Rik-001'
),
'ENSMUST00000175073' => array(
'start' => '18129452',
'end' => '18129577',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23638-201'
),
'ENSMUST00000183376' => array(
'start' => '18057846',
'end' => '18057903',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7655-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007JW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JW_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007JW_0001' => array(
'genes_in_region' => array(
'ENSG00000078403' => array(
[maximum depth reached]
),
'ENSG00000180592' => array(
[maximum depth reached]
),
'ENSG00000223984' => array(
[maximum depth reached]
),
'ENSG00000252634' => array(
[maximum depth reached]
),
'ENSG00000279623' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Lung',
(int) 5 => 'Muscle',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Lung',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Kidney',
(int) 21 => 'Testis',
(int) 22 => 'Placenta',
(int) 23 => 'Muscle',
(int) 24 => 'Muscle',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Colon',
(int) 51 => 'Lung',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Ovary',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Breast',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis'
)
),
'CIL_0007JW_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000026740' => array(
[maximum depth reached]
),
'ENSMUSG00000026743' => array(
[maximum depth reached]
),
'ENSMUSG00000054074' => array(
[maximum depth reached]
),
'ENSMUSG00000064964' => array(
[maximum depth reached]
),
'ENSMUSG00000081619' => array(
[maximum depth reached]
),
'ENSMUSG00000083070' => array(
[maximum depth reached]
),
'ENSMUSG00000086340' => array(
[maximum depth reached]
),
'ENSMUSG00000092814' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Placenta',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Ovary',
(int) 17 => 'Brain',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Adrenal',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Colon',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Adipose',
(int) 74 => 'Adrenal',
(int) 75 => 'Bladder',
(int) 76 => 'Brain',
(int) 77 => 'Breast',
(int) 78 => 'Colon',
(int) 79 => 'Heart',
(int) 80 => 'Kidney',
(int) 81 => 'Liver',
(int) 82 => 'Lung',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis',
(int) 87 => 'Adipose',
(int) 88 => 'Adrenal',
(int) 89 => 'Bladder',
(int) 90 => 'Brain',
(int) 91 => 'Breast',
(int) 92 => 'Colon',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Liver',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Adrenal',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Testis',
(int) 105 => 'Breast',
(int) 106 => 'Heart',
(int) 107 => 'Muscle',
(int) 108 => 'Testis',
(int) 109 => 'Liver',
(int) 110 => 'Testis',
(int) 111 => 'Adrenal',
(int) 112 => 'Bladder',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Muscle',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Bladder',
(int) 123 => 'Brain',
(int) 124 => 'Heart',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Adipose',
(int) 129 => 'Bladder',
(int) 130 => 'Brain',
(int) 131 => 'Breast',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Bladder',
(int) 139 => 'Kidney',
(int) 140 => 'Liver',
(int) 141 => 'Lung'
)
)
)
$gene_desc_arr = array(
'ENSG00000078403' => 'myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10',
'ENSG00000136770' => 'DnaJ (Hsp40) homolog, subfamily C, member 1',
'ENSG00000180592' => 'SKI/DACH domain containing 1',
'ENSG00000201390' => 'RNA, U6 small nuclear 1141, pseudogene',
'ENSG00000207347' => 'RNA, U6 small nuclear 306, pseudogene',
'ENSG00000223984' => 'heterogeneous nuclear ribonucleoprotein R pseudogene 1',
'ENSG00000252634' => 'RNA, 7SK small nuclear pseudogene 219',
'ENSG00000279623' => null,
'ENSMUSG00000026740' => 'DnaJ (Hsp40) homolog, subfamily C, member 1',
'ENSMUSG00000026743' => 'myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10',
'ENSMUSG00000054074' => 'SKI/DACH domain containing 1',
'ENSMUSG00000064964' => 'predicted gene, 25147',
'ENSMUSG00000081619' => 'predicted gene 13351',
'ENSMUSG00000083070' => 'predicted gene 13350',
'ENSMUSG00000086340' => 'RIKEN cDNA 1810059C17 gene',
'ENSMUSG00000092814' => 'predicted gene, 23638',
'ENSMUSG00000099050' => 'microRNA 7655'
)
$gene_name_arr = array(
'ENSG00000078403' => 'MLLT10',
'ENSG00000136770' => 'DNAJC1',
'ENSG00000180592' => 'SKIDA1',
'ENSG00000201390' => 'RNU6-1141P',
'ENSG00000207347' => 'RNU6-306P',
'ENSG00000223984' => 'HNRNPRP1',
'ENSG00000252634' => 'RN7SKP219',
'ENSG00000279623' => 'RP11-399C16.3',
'ENSMUSG00000026740' => 'Dnajc1',
'ENSMUSG00000026743' => 'Mllt10',
'ENSMUSG00000054074' => 'Skida1',
'ENSMUSG00000064964' => 'Gm25147',
'ENSMUSG00000081619' => 'Gm13351',
'ENSMUSG00000083070' => 'Gm13350',
'ENSMUSG00000086340' => '1810059C17Rik',
'ENSMUSG00000092814' => 'Gm23638',
'ENSMUSG00000099050' => 'Mir7655'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JW_0001',
'tax_id' => '9606',
'chromosome' => '10',
'seq_start' => '21518181',
'seq_end' => '21922252',
'region_length' => '404071',
'region_type' => 'UCNEbase',
'el_id' => 'MLLT10'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JW_0002',
'tax_id' => '10090',
'chromosome' => '2',
'seq_start' => '18048722',
'seq_end' => '18311061',
'region_length' => '262339',
'region_type' => 'UCNEbase',
'el_id' => 'MLLT10'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JW_0003',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '17688673',
'seq_end' => '17688888',
'region_length' => '215',
'region_type' => 'UCNEbase',
'el_id' => 'MLLT10'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 42 => 'Brain',
(int) 56 => 'Breast',
(int) 73 => 'Colon',
(int) 88 => 'Heart',
(int) 99 => 'Kidney',
(int) 113 => 'Liver',
(int) 129 => 'Lung',
(int) 145 => 'Muscle',
(int) 162 => 'Ovary',
(int) 185 => 'Placenta',
(int) 204 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 62
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000307729' => array(
'start' => '21534343',
'end' => '21743630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-002'
),
'ENST00000377059' => array(
'start' => '21534645',
'end' => '21743626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-201'
),
'ENST00000377072' => array(
'start' => '21534173',
'end' => '21743630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-001'
),
'ENST00000377091' => array(
'start' => '21534345',
'end' => '21557025',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-003'
),
'ENST00000377100' => array(
'start' => '21534165',
'end' => '21557182',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-013'
),
'ENST00000420525' => array(
'start' => '21673578',
'end' => '21713922',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-009'
),
'ENST00000430455' => array(
'start' => '21534749',
'end' => '21595378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-004'
),
'ENST00000438473' => array(
'start' => '21651754',
'end' => '21730944',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-007'
),
'ENST00000462999' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-006'
),
'ENST00000468309' => array(
'start' => '21668972',
'end' => '21671014',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-014'
),
'ENST00000471315' => array(
'start' => '21534468',
'end' => '21538964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-005'
),
'ENST00000476557' => array(
'start' => '21534702',
'end' => '21595582',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-012'
),
'ENST00000479634' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-010'
),
'ENST00000480415' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-008'
),
'ENST00000495130' => array(
'start' => '21534490',
'end' => '21612451',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-011'
),
'ENST00000621220' => array(
'start' => '21534645',
'end' => '21556677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-202'
),
'ENST00000376946' => array(
'start' => '21920610',
'end' => '22003769',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAJC1-004'
),
'ENST00000376980' => array(
'start' => '21756537',
'end' => '22003725',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAJC1-001'
),
'ENST00000447548' => array(
'start' => '21919903',
'end' => '22003399',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC1-005'
),
'ENST00000476103' => array(
'start' => '21919889',
'end' => '22003585',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC1-003'
),
'ENST00000483085' => array(
'start' => '21759509',
'end' => '21860906',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC1-002'
),
'ENST00000444772' => array(
'start' => '21515016',
'end' => '21517919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SKIDA1-201'
),
'ENST00000449193' => array(
'start' => '21513478',
'end' => '21525682',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SKIDA1-001'
),
'ENST00000487107' => array(
'start' => '21519508',
'end' => '21523895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SKIDA1-002'
),
'ENST00000364520' => array(
'start' => '21661635',
'end' => '21661741',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1141P-201'
),
'ENST00000384617' => array(
'start' => '21564471',
'end' => '21564577',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-306P-201'
),
'ENST00000453465' => array(
'start' => '21624592',
'end' => '21626286',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HNRNPRP1-001'
),
'ENST00000516825' => array(
'start' => '21785292',
'end' => '21785587',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP219-201'
),
'ENST00000624879' => array(
'start' => '21865335',
'end' => '21865921',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-399C16.3-001'
),
'ENSMUST00000028072' => array(
'start' => '18217135',
'end' => '18392642',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-008'
),
'ENSMUST00000091418' => array(
'start' => '18206333',
'end' => '18392811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-004'
),
'ENSMUST00000148401' => array(
'start' => '18195654',
'end' => '18219557',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-003'
),
'ENSMUST00000153055' => array(
'start' => '18308585',
'end' => '18392824',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnajc1-002'
),
'ENSMUST00000163130' => array(
'start' => '18217135',
'end' => '18392420',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-006'
),
'ENSMUST00000164606' => array(
'start' => '18306638',
'end' => '18310258',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnajc1-007'
),
'ENSMUST00000164835' => array(
'start' => '18219531',
'end' => '18307016',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-011'
),
'ENSMUST00000165793' => array(
'start' => '18316792',
'end' => '18392830',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnajc1-010'
),
'ENSMUST00000166495' => array(
'start' => '18213749',
'end' => '18392830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-001'
),
'ENSMUST00000168723' => array(
'start' => '18217155',
'end' => '18392421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-005'
),
'ENSMUST00000172210' => array(
'start' => '18209229',
'end' => '18216902',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnajc1-009'
),
'ENSMUST00000028076' => array(
'start' => '18055237',
'end' => '18212387',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-201'
),
'ENSMUST00000114669' => array(
'start' => '18126156',
'end' => '18212386',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-003'
),
'ENSMUST00000114671' => array(
'start' => '18064636',
'end' => '18212388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-002'
),
'ENSMUST00000114680' => array(
'start' => '18064687',
'end' => '18210970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-001'
),
'ENSMUST00000133649' => array(
'start' => '18064805',
'end' => '18123812',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-009'
),
'ENSMUST00000148229' => array(
'start' => '18123709',
'end' => '18159590',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-007'
),
'ENSMUST00000149786' => array(
'start' => '18170251',
'end' => '18186857',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-008'
),
'ENSMUST00000150422' => array(
'start' => '18064394',
'end' => '18122348',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-005'
),
'ENSMUST00000153279' => array(
'start' => '18064834',
'end' => '18109891',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-006'
),
'ENSMUST00000154041' => array(
'start' => '18064684',
'end' => '18126229',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-004'
),
'ENSMUST00000155352' => array(
'start' => '18064841',
'end' => '18065255',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-010'
),
'ENSMUST00000066885' => array(
'start' => '18045253',
'end' => '18048449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-201'
),
'ENSMUST00000091420' => array(
'start' => '18044083',
'end' => '18049051',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-001'
),
'ENSMUST00000142856' => array(
'start' => '18047716',
'end' => '18048784',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-003'
),
'ENSMUST00000152908' => array(
'start' => '18048144',
'end' => '18049031',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-002'
),
'ENSMUST00000173604' => array(
'start' => '18040676',
'end' => '18044572',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Skida1-004'
),
'ENSMUST00000083030' => array(
'start' => '18158687',
'end' => '18158791',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25147-201'
),
'ENSMUST00000118087' => array(
'start' => '18179029',
'end' => '18179442',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13351-001'
),
'ENSMUST00000120519' => array(
'start' => '18249365',
'end' => '18249843',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13350-001'
),
'ENSMUST00000125173' => array(
'start' => '18054193',
'end' => '18056613',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '1810059C17Rik-001'
),
'ENSMUST00000175073' => array(
'start' => '18129452',
'end' => '18129577',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23638-201'
),
'ENSMUST00000183376' => array(
'start' => '18057846',
'end' => '18057903',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7655-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007JW_0001' => array(
'genes_in_region' => array(
'ENSG00000078403' => array(
[maximum depth reached]
),
'ENSG00000180592' => array(
[maximum depth reached]
),
'ENSG00000223984' => array(
[maximum depth reached]
),
'ENSG00000252634' => array(
[maximum depth reached]
),
'ENSG00000279623' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Lung',
(int) 5 => 'Muscle',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Lung',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Kidney',
(int) 21 => 'Testis',
(int) 22 => 'Placenta',
(int) 23 => 'Muscle',
(int) 24 => 'Muscle',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Colon',
(int) 51 => 'Lung',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Ovary',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Breast',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis'
)
),
'CIL_0007JW_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000026740' => array(
[maximum depth reached]
),
'ENSMUSG00000026743' => array(
[maximum depth reached]
),
'ENSMUSG00000054074' => array(
[maximum depth reached]
),
'ENSMUSG00000064964' => array(
[maximum depth reached]
),
'ENSMUSG00000081619' => array(
[maximum depth reached]
),
'ENSMUSG00000083070' => array(
[maximum depth reached]
),
'ENSMUSG00000086340' => array(
[maximum depth reached]
),
'ENSMUSG00000092814' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Placenta',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Ovary',
(int) 17 => 'Brain',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Adrenal',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Colon',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Adipose',
(int) 74 => 'Adrenal',
(int) 75 => 'Bladder',
(int) 76 => 'Brain',
(int) 77 => 'Breast',
(int) 78 => 'Colon',
(int) 79 => 'Heart',
(int) 80 => 'Kidney',
(int) 81 => 'Liver',
(int) 82 => 'Lung',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis',
(int) 87 => 'Adipose',
(int) 88 => 'Adrenal',
(int) 89 => 'Bladder',
(int) 90 => 'Brain',
(int) 91 => 'Breast',
(int) 92 => 'Colon',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Liver',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Adrenal',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Testis',
(int) 105 => 'Breast',
(int) 106 => 'Heart',
(int) 107 => 'Muscle',
(int) 108 => 'Testis',
(int) 109 => 'Liver',
(int) 110 => 'Testis',
(int) 111 => 'Adrenal',
(int) 112 => 'Bladder',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Muscle',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Bladder',
(int) 123 => 'Brain',
(int) 124 => 'Heart',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Adipose',
(int) 129 => 'Bladder',
(int) 130 => 'Brain',
(int) 131 => 'Breast',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Bladder',
(int) 139 => 'Kidney',
(int) 140 => 'Liver',
(int) 141 => 'Lung'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JW_0003',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '17688673',
'seq_end' => '17688888',
'region_length' => '215',
'region_type' => 'UCNEbase',
'el_id' => 'MLLT10'
)
)
$gene_el = array(
'ENSMUST00000175073' => array(
'Bladder' => array(
'average_FPKM' => '19.205',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '823.650',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '206.039',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '542.565',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000092814'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '19.205',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '823.650',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '206.039',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '542.565',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000175073'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
<tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007JW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JW_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000078403' => 'myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10',
'ENSG00000136770' => 'DnaJ (Hsp40) homolog, subfamily C, member 1',
'ENSG00000180592' => 'SKI/DACH domain containing 1',
'ENSG00000201390' => 'RNA, U6 small nuclear 1141, pseudogene',
'ENSG00000207347' => 'RNA, U6 small nuclear 306, pseudogene',
'ENSG00000223984' => 'heterogeneous nuclear ribonucleoprotein R pseudogene 1',
'ENSG00000252634' => 'RNA, 7SK small nuclear pseudogene 219',
'ENSG00000279623' => null,
'ENSMUSG00000026740' => 'DnaJ (Hsp40) homolog, subfamily C, member 1',
'ENSMUSG00000026743' => 'myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10',
'ENSMUSG00000054074' => 'SKI/DACH domain containing 1',
'ENSMUSG00000064964' => 'predicted gene, 25147',
'ENSMUSG00000081619' => 'predicted gene 13351',
'ENSMUSG00000083070' => 'predicted gene 13350',
'ENSMUSG00000086340' => 'RIKEN cDNA 1810059C17 gene',
'ENSMUSG00000092814' => 'predicted gene, 23638',
'ENSMUSG00000099050' => 'microRNA 7655'
),
'gene_name_arr' => array(
'ENSG00000078403' => 'MLLT10',
'ENSG00000136770' => 'DNAJC1',
'ENSG00000180592' => 'SKIDA1',
'ENSG00000201390' => 'RNU6-1141P',
'ENSG00000207347' => 'RNU6-306P',
'ENSG00000223984' => 'HNRNPRP1',
'ENSG00000252634' => 'RN7SKP219',
'ENSG00000279623' => 'RP11-399C16.3',
'ENSMUSG00000026740' => 'Dnajc1',
'ENSMUSG00000026743' => 'Mllt10',
'ENSMUSG00000054074' => 'Skida1',
'ENSMUSG00000064964' => 'Gm25147',
'ENSMUSG00000081619' => 'Gm13351',
'ENSMUSG00000083070' => 'Gm13350',
'ENSMUSG00000086340' => '1810059C17Rik',
'ENSMUSG00000092814' => 'Gm23638',
'ENSMUSG00000099050' => 'Mir7655'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 42 => 'Brain',
(int) 56 => 'Breast',
(int) 73 => 'Colon',
(int) 88 => 'Heart',
(int) 99 => 'Kidney',
(int) 113 => 'Liver',
(int) 129 => 'Lung',
(int) 145 => 'Muscle',
(int) 162 => 'Ovary',
(int) 185 => 'Placenta',
(int) 204 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 62,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000307729' => array(
'start' => '21534343',
'end' => '21743630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-002'
),
'ENST00000377059' => array(
'start' => '21534645',
'end' => '21743626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-201'
),
'ENST00000377072' => array(
'start' => '21534173',
'end' => '21743630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-001'
),
'ENST00000377091' => array(
'start' => '21534345',
'end' => '21557025',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-003'
),
'ENST00000377100' => array(
'start' => '21534165',
'end' => '21557182',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-013'
),
'ENST00000420525' => array(
'start' => '21673578',
'end' => '21713922',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-009'
),
'ENST00000430455' => array(
'start' => '21534749',
'end' => '21595378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-004'
),
'ENST00000438473' => array(
'start' => '21651754',
'end' => '21730944',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-007'
),
'ENST00000462999' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-006'
),
'ENST00000468309' => array(
'start' => '21668972',
'end' => '21671014',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-014'
),
'ENST00000471315' => array(
'start' => '21534468',
'end' => '21538964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-005'
),
'ENST00000476557' => array(
'start' => '21534702',
'end' => '21595582',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-012'
),
'ENST00000479634' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-010'
),
'ENST00000480415' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-008'
),
'ENST00000495130' => array(
'start' => '21534490',
'end' => '21612451',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-011'
),
'ENST00000621220' => array(
'start' => '21534645',
'end' => '21556677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-202'
),
'ENST00000376946' => array(
'start' => '21920610',
'end' => '22003769',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAJC1-004'
),
'ENST00000376980' => array(
'start' => '21756537',
'end' => '22003725',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAJC1-001'
),
'ENST00000447548' => array(
'start' => '21919903',
'end' => '22003399',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC1-005'
),
'ENST00000476103' => array(
'start' => '21919889',
'end' => '22003585',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC1-003'
),
'ENST00000483085' => array(
'start' => '21759509',
'end' => '21860906',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC1-002'
),
'ENST00000444772' => array(
'start' => '21515016',
'end' => '21517919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SKIDA1-201'
),
'ENST00000449193' => array(
'start' => '21513478',
'end' => '21525682',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SKIDA1-001'
),
'ENST00000487107' => array(
'start' => '21519508',
'end' => '21523895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SKIDA1-002'
),
'ENST00000364520' => array(
'start' => '21661635',
'end' => '21661741',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1141P-201'
),
'ENST00000384617' => array(
'start' => '21564471',
'end' => '21564577',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-306P-201'
),
'ENST00000453465' => array(
'start' => '21624592',
'end' => '21626286',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HNRNPRP1-001'
),
'ENST00000516825' => array(
'start' => '21785292',
'end' => '21785587',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP219-201'
),
'ENST00000624879' => array(
'start' => '21865335',
'end' => '21865921',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-399C16.3-001'
),
'ENSMUST00000028072' => array(
'start' => '18217135',
'end' => '18392642',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-008'
),
'ENSMUST00000091418' => array(
'start' => '18206333',
'end' => '18392811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-004'
),
'ENSMUST00000148401' => array(
'start' => '18195654',
'end' => '18219557',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-003'
),
'ENSMUST00000153055' => array(
'start' => '18308585',
'end' => '18392824',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnajc1-002'
),
'ENSMUST00000163130' => array(
'start' => '18217135',
'end' => '18392420',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-006'
),
'ENSMUST00000164606' => array(
'start' => '18306638',
'end' => '18310258',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnajc1-007'
),
'ENSMUST00000164835' => array(
'start' => '18219531',
'end' => '18307016',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-011'
),
'ENSMUST00000165793' => array(
'start' => '18316792',
'end' => '18392830',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnajc1-010'
),
'ENSMUST00000166495' => array(
'start' => '18213749',
'end' => '18392830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-001'
),
'ENSMUST00000168723' => array(
'start' => '18217155',
'end' => '18392421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-005'
),
'ENSMUST00000172210' => array(
'start' => '18209229',
'end' => '18216902',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnajc1-009'
),
'ENSMUST00000028076' => array(
'start' => '18055237',
'end' => '18212387',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-201'
),
'ENSMUST00000114669' => array(
'start' => '18126156',
'end' => '18212386',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-003'
),
'ENSMUST00000114671' => array(
'start' => '18064636',
'end' => '18212388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-002'
),
'ENSMUST00000114680' => array(
'start' => '18064687',
'end' => '18210970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-001'
),
'ENSMUST00000133649' => array(
'start' => '18064805',
'end' => '18123812',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-009'
),
'ENSMUST00000148229' => array(
'start' => '18123709',
'end' => '18159590',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-007'
),
'ENSMUST00000149786' => array(
'start' => '18170251',
'end' => '18186857',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-008'
),
'ENSMUST00000150422' => array(
'start' => '18064394',
'end' => '18122348',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-005'
),
'ENSMUST00000153279' => array(
'start' => '18064834',
'end' => '18109891',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-006'
),
'ENSMUST00000154041' => array(
'start' => '18064684',
'end' => '18126229',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-004'
),
'ENSMUST00000155352' => array(
'start' => '18064841',
'end' => '18065255',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-010'
),
'ENSMUST00000066885' => array(
'start' => '18045253',
'end' => '18048449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-201'
),
'ENSMUST00000091420' => array(
'start' => '18044083',
'end' => '18049051',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-001'
),
'ENSMUST00000142856' => array(
'start' => '18047716',
'end' => '18048784',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-003'
),
'ENSMUST00000152908' => array(
'start' => '18048144',
'end' => '18049031',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-002'
),
'ENSMUST00000173604' => array(
'start' => '18040676',
'end' => '18044572',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Skida1-004'
),
'ENSMUST00000083030' => array(
'start' => '18158687',
'end' => '18158791',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25147-201'
),
'ENSMUST00000118087' => array(
'start' => '18179029',
'end' => '18179442',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13351-001'
),
'ENSMUST00000120519' => array(
'start' => '18249365',
'end' => '18249843',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13350-001'
),
'ENSMUST00000125173' => array(
'start' => '18054193',
'end' => '18056613',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '1810059C17Rik-001'
),
'ENSMUST00000175073' => array(
'start' => '18129452',
'end' => '18129577',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23638-201'
),
'ENSMUST00000183376' => array(
'start' => '18057846',
'end' => '18057903',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7655-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007JW_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007JW_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007JW_0001' => array(
'genes_in_region' => array(
'ENSG00000078403' => array(
[maximum depth reached]
),
'ENSG00000180592' => array(
[maximum depth reached]
),
'ENSG00000223984' => array(
[maximum depth reached]
),
'ENSG00000252634' => array(
[maximum depth reached]
),
'ENSG00000279623' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Lung',
(int) 5 => 'Muscle',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Lung',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Kidney',
(int) 21 => 'Testis',
(int) 22 => 'Placenta',
(int) 23 => 'Muscle',
(int) 24 => 'Muscle',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Colon',
(int) 51 => 'Lung',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Ovary',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Breast',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis'
)
),
'CIL_0007JW_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000026740' => array(
[maximum depth reached]
),
'ENSMUSG00000026743' => array(
[maximum depth reached]
),
'ENSMUSG00000054074' => array(
[maximum depth reached]
),
'ENSMUSG00000064964' => array(
[maximum depth reached]
),
'ENSMUSG00000081619' => array(
[maximum depth reached]
),
'ENSMUSG00000083070' => array(
[maximum depth reached]
),
'ENSMUSG00000086340' => array(
[maximum depth reached]
),
'ENSMUSG00000092814' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Placenta',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Ovary',
(int) 17 => 'Brain',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Adrenal',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Colon',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Adipose',
(int) 74 => 'Adrenal',
(int) 75 => 'Bladder',
(int) 76 => 'Brain',
(int) 77 => 'Breast',
(int) 78 => 'Colon',
(int) 79 => 'Heart',
(int) 80 => 'Kidney',
(int) 81 => 'Liver',
(int) 82 => 'Lung',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis',
(int) 87 => 'Adipose',
(int) 88 => 'Adrenal',
(int) 89 => 'Bladder',
(int) 90 => 'Brain',
(int) 91 => 'Breast',
(int) 92 => 'Colon',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Liver',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Adrenal',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Testis',
(int) 105 => 'Breast',
(int) 106 => 'Heart',
(int) 107 => 'Muscle',
(int) 108 => 'Testis',
(int) 109 => 'Liver',
(int) 110 => 'Testis',
(int) 111 => 'Adrenal',
(int) 112 => 'Bladder',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Muscle',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Bladder',
(int) 123 => 'Brain',
(int) 124 => 'Heart',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Adipose',
(int) 129 => 'Bladder',
(int) 130 => 'Brain',
(int) 131 => 'Breast',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Bladder',
(int) 139 => 'Kidney',
(int) 140 => 'Liver',
(int) 141 => 'Lung'
)
)
)
$gene_desc_arr = array(
'ENSG00000078403' => 'myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10',
'ENSG00000136770' => 'DnaJ (Hsp40) homolog, subfamily C, member 1',
'ENSG00000180592' => 'SKI/DACH domain containing 1',
'ENSG00000201390' => 'RNA, U6 small nuclear 1141, pseudogene',
'ENSG00000207347' => 'RNA, U6 small nuclear 306, pseudogene',
'ENSG00000223984' => 'heterogeneous nuclear ribonucleoprotein R pseudogene 1',
'ENSG00000252634' => 'RNA, 7SK small nuclear pseudogene 219',
'ENSG00000279623' => null,
'ENSMUSG00000026740' => 'DnaJ (Hsp40) homolog, subfamily C, member 1',
'ENSMUSG00000026743' => 'myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10',
'ENSMUSG00000054074' => 'SKI/DACH domain containing 1',
'ENSMUSG00000064964' => 'predicted gene, 25147',
'ENSMUSG00000081619' => 'predicted gene 13351',
'ENSMUSG00000083070' => 'predicted gene 13350',
'ENSMUSG00000086340' => 'RIKEN cDNA 1810059C17 gene',
'ENSMUSG00000092814' => 'predicted gene, 23638',
'ENSMUSG00000099050' => 'microRNA 7655'
)
$gene_name_arr = array(
'ENSG00000078403' => 'MLLT10',
'ENSG00000136770' => 'DNAJC1',
'ENSG00000180592' => 'SKIDA1',
'ENSG00000201390' => 'RNU6-1141P',
'ENSG00000207347' => 'RNU6-306P',
'ENSG00000223984' => 'HNRNPRP1',
'ENSG00000252634' => 'RN7SKP219',
'ENSG00000279623' => 'RP11-399C16.3',
'ENSMUSG00000026740' => 'Dnajc1',
'ENSMUSG00000026743' => 'Mllt10',
'ENSMUSG00000054074' => 'Skida1',
'ENSMUSG00000064964' => 'Gm25147',
'ENSMUSG00000081619' => 'Gm13351',
'ENSMUSG00000083070' => 'Gm13350',
'ENSMUSG00000086340' => '1810059C17Rik',
'ENSMUSG00000092814' => 'Gm23638',
'ENSMUSG00000099050' => 'Mir7655'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JW_0001',
'tax_id' => '9606',
'chromosome' => '10',
'seq_start' => '21518181',
'seq_end' => '21922252',
'region_length' => '404071',
'region_type' => 'UCNEbase',
'el_id' => 'MLLT10'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JW_0002',
'tax_id' => '10090',
'chromosome' => '2',
'seq_start' => '18048722',
'seq_end' => '18311061',
'region_length' => '262339',
'region_type' => 'UCNEbase',
'el_id' => 'MLLT10'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JW_0003',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '17688673',
'seq_end' => '17688888',
'region_length' => '215',
'region_type' => 'UCNEbase',
'el_id' => 'MLLT10'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 13 => 'Adrenal',
(int) 26 => 'Bladder',
(int) 42 => 'Brain',
(int) 56 => 'Breast',
(int) 73 => 'Colon',
(int) 88 => 'Heart',
(int) 99 => 'Kidney',
(int) 113 => 'Liver',
(int) 129 => 'Lung',
(int) 145 => 'Muscle',
(int) 162 => 'Ovary',
(int) 185 => 'Placenta',
(int) 204 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 62
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000307729' => array(
'start' => '21534343',
'end' => '21743630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-002'
),
'ENST00000377059' => array(
'start' => '21534645',
'end' => '21743626',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-201'
),
'ENST00000377072' => array(
'start' => '21534173',
'end' => '21743630',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-001'
),
'ENST00000377091' => array(
'start' => '21534345',
'end' => '21557025',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-003'
),
'ENST00000377100' => array(
'start' => '21534165',
'end' => '21557182',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-013'
),
'ENST00000420525' => array(
'start' => '21673578',
'end' => '21713922',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-009'
),
'ENST00000430455' => array(
'start' => '21534749',
'end' => '21595378',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-004'
),
'ENST00000438473' => array(
'start' => '21651754',
'end' => '21730944',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-007'
),
'ENST00000462999' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-006'
),
'ENST00000468309' => array(
'start' => '21668972',
'end' => '21671014',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-014'
),
'ENST00000471315' => array(
'start' => '21534468',
'end' => '21538964',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-005'
),
'ENST00000476557' => array(
'start' => '21534702',
'end' => '21595582',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-012'
),
'ENST00000479634' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-010'
),
'ENST00000480415' => array(
'start' => '21534749',
'end' => '21595384',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-008'
),
'ENST00000495130' => array(
'start' => '21534490',
'end' => '21612451',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MLLT10-011'
),
'ENST00000621220' => array(
'start' => '21534645',
'end' => '21556677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MLLT10-202'
),
'ENST00000376946' => array(
'start' => '21920610',
'end' => '22003769',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DNAJC1-004'
),
'ENST00000376980' => array(
'start' => '21756537',
'end' => '22003725',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DNAJC1-001'
),
'ENST00000447548' => array(
'start' => '21919903',
'end' => '22003399',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC1-005'
),
'ENST00000476103' => array(
'start' => '21919889',
'end' => '22003585',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DNAJC1-003'
),
'ENST00000483085' => array(
'start' => '21759509',
'end' => '21860906',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DNAJC1-002'
),
'ENST00000444772' => array(
'start' => '21515016',
'end' => '21517919',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SKIDA1-201'
),
'ENST00000449193' => array(
'start' => '21513478',
'end' => '21525682',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SKIDA1-001'
),
'ENST00000487107' => array(
'start' => '21519508',
'end' => '21523895',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'SKIDA1-002'
),
'ENST00000364520' => array(
'start' => '21661635',
'end' => '21661741',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-1141P-201'
),
'ENST00000384617' => array(
'start' => '21564471',
'end' => '21564577',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'RNU6-306P-201'
),
'ENST00000453465' => array(
'start' => '21624592',
'end' => '21626286',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HNRNPRP1-001'
),
'ENST00000516825' => array(
'start' => '21785292',
'end' => '21785587',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SKP219-201'
),
'ENST00000624879' => array(
'start' => '21865335',
'end' => '21865921',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-399C16.3-001'
),
'ENSMUST00000028072' => array(
'start' => '18217135',
'end' => '18392642',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-008'
),
'ENSMUST00000091418' => array(
'start' => '18206333',
'end' => '18392811',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-004'
),
'ENSMUST00000148401' => array(
'start' => '18195654',
'end' => '18219557',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-003'
),
'ENSMUST00000153055' => array(
'start' => '18308585',
'end' => '18392824',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnajc1-002'
),
'ENSMUST00000163130' => array(
'start' => '18217135',
'end' => '18392420',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-006'
),
'ENSMUST00000164606' => array(
'start' => '18306638',
'end' => '18310258',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnajc1-007'
),
'ENSMUST00000164835' => array(
'start' => '18219531',
'end' => '18307016',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Dnajc1-011'
),
'ENSMUST00000165793' => array(
'start' => '18316792',
'end' => '18392830',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Dnajc1-010'
),
'ENSMUST00000166495' => array(
'start' => '18213749',
'end' => '18392830',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-001'
),
'ENSMUST00000168723' => array(
'start' => '18217155',
'end' => '18392421',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Dnajc1-005'
),
'ENSMUST00000172210' => array(
'start' => '18209229',
'end' => '18216902',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Dnajc1-009'
),
'ENSMUST00000028076' => array(
'start' => '18055237',
'end' => '18212387',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-201'
),
'ENSMUST00000114669' => array(
'start' => '18126156',
'end' => '18212386',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-003'
),
'ENSMUST00000114671' => array(
'start' => '18064636',
'end' => '18212388',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-002'
),
'ENSMUST00000114680' => array(
'start' => '18064687',
'end' => '18210970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mllt10-001'
),
'ENSMUST00000133649' => array(
'start' => '18064805',
'end' => '18123812',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-009'
),
'ENSMUST00000148229' => array(
'start' => '18123709',
'end' => '18159590',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-007'
),
'ENSMUST00000149786' => array(
'start' => '18170251',
'end' => '18186857',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-008'
),
'ENSMUST00000150422' => array(
'start' => '18064394',
'end' => '18122348',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-005'
),
'ENSMUST00000153279' => array(
'start' => '18064834',
'end' => '18109891',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-006'
),
'ENSMUST00000154041' => array(
'start' => '18064684',
'end' => '18126229',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-004'
),
'ENSMUST00000155352' => array(
'start' => '18064841',
'end' => '18065255',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mllt10-010'
),
'ENSMUST00000066885' => array(
'start' => '18045253',
'end' => '18048449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-201'
),
'ENSMUST00000091420' => array(
'start' => '18044083',
'end' => '18049051',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-001'
),
'ENSMUST00000142856' => array(
'start' => '18047716',
'end' => '18048784',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-003'
),
'ENSMUST00000152908' => array(
'start' => '18048144',
'end' => '18049031',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Skida1-002'
),
'ENSMUST00000173604' => array(
'start' => '18040676',
'end' => '18044572',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Skida1-004'
),
'ENSMUST00000083030' => array(
'start' => '18158687',
'end' => '18158791',
'transcript_biotype' => 'snRNA',
'transcript_name' => 'Gm25147-201'
),
'ENSMUST00000118087' => array(
'start' => '18179029',
'end' => '18179442',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13351-001'
),
'ENSMUST00000120519' => array(
'start' => '18249365',
'end' => '18249843',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13350-001'
),
'ENSMUST00000125173' => array(
'start' => '18054193',
'end' => '18056613',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => '1810059C17Rik-001'
),
'ENSMUST00000175073' => array(
'start' => '18129452',
'end' => '18129577',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm23638-201'
),
'ENSMUST00000183376' => array(
'start' => '18057846',
'end' => '18057903',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Mir7655-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007JW_0001' => array(
'genes_in_region' => array(
'ENSG00000078403' => array(
[maximum depth reached]
),
'ENSG00000180592' => array(
[maximum depth reached]
),
'ENSG00000223984' => array(
[maximum depth reached]
),
'ENSG00000252634' => array(
[maximum depth reached]
),
'ENSG00000279623' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Lung',
(int) 5 => 'Muscle',
(int) 6 => 'Ovary',
(int) 7 => 'Testis',
(int) 8 => 'Adrenal',
(int) 9 => 'Bladder',
(int) 10 => 'Breast',
(int) 11 => 'Colon',
(int) 12 => 'Heart',
(int) 13 => 'Kidney',
(int) 14 => 'Liver',
(int) 15 => 'Lung',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Kidney',
(int) 21 => 'Testis',
(int) 22 => 'Placenta',
(int) 23 => 'Muscle',
(int) 24 => 'Muscle',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Testis',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Kidney',
(int) 44 => 'Liver',
(int) 45 => 'Lung',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Colon',
(int) 51 => 'Lung',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Testis',
(int) 55 => 'Ovary',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Adrenal',
(int) 59 => 'Bladder',
(int) 60 => 'Brain',
(int) 61 => 'Colon',
(int) 62 => 'Heart',
(int) 63 => 'Muscle',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Adipose',
(int) 68 => 'Breast',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Bladder',
(int) 74 => 'Brain',
(int) 75 => 'Breast',
(int) 76 => 'Colon',
(int) 77 => 'Heart',
(int) 78 => 'Kidney',
(int) 79 => 'Liver',
(int) 80 => 'Lung',
(int) 81 => 'Ovary',
(int) 82 => 'Placenta',
(int) 83 => 'Testis'
)
),
'CIL_0007JW_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000026740' => array(
[maximum depth reached]
),
'ENSMUSG00000026743' => array(
[maximum depth reached]
),
'ENSMUSG00000054074' => array(
[maximum depth reached]
),
'ENSMUSG00000064964' => array(
[maximum depth reached]
),
'ENSMUSG00000081619' => array(
[maximum depth reached]
),
'ENSMUSG00000083070' => array(
[maximum depth reached]
),
'ENSMUSG00000086340' => array(
[maximum depth reached]
),
'ENSMUSG00000092814' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Ovary',
(int) 1 => 'Placenta',
(int) 2 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Kidney',
(int) 9 => 'Liver',
(int) 10 => 'Lung',
(int) 11 => 'Muscle',
(int) 12 => 'Ovary',
(int) 13 => 'Placenta',
(int) 14 => 'Testis',
(int) 15 => 'Adrenal',
(int) 16 => 'Ovary',
(int) 17 => 'Brain',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Adrenal',
(int) 21 => 'Breast',
(int) 22 => 'Colon',
(int) 23 => 'Lung',
(int) 24 => 'Ovary',
(int) 25 => 'Adipose',
(int) 26 => 'Adrenal',
(int) 27 => 'Bladder',
(int) 28 => 'Brain',
(int) 29 => 'Breast',
(int) 30 => 'Colon',
(int) 31 => 'Heart',
(int) 32 => 'Kidney',
(int) 33 => 'Liver',
(int) 34 => 'Lung',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Breast',
(int) 41 => 'Kidney',
(int) 42 => 'Liver',
(int) 43 => 'Muscle',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 50 => 'Brain',
(int) 51 => 'Breast',
(int) 52 => 'Colon',
(int) 53 => 'Heart',
(int) 54 => 'Kidney',
(int) 55 => 'Liver',
(int) 56 => 'Lung',
(int) 57 => 'Muscle',
(int) 58 => 'Ovary',
(int) 59 => 'Placenta',
(int) 60 => 'Testis',
(int) 61 => 'Adipose',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Colon',
(int) 65 => 'Kidney',
(int) 66 => 'Liver',
(int) 67 => 'Lung',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Testis',
(int) 72 => 'Testis',
(int) 73 => 'Adipose',
(int) 74 => 'Adrenal',
(int) 75 => 'Bladder',
(int) 76 => 'Brain',
(int) 77 => 'Breast',
(int) 78 => 'Colon',
(int) 79 => 'Heart',
(int) 80 => 'Kidney',
(int) 81 => 'Liver',
(int) 82 => 'Lung',
(int) 83 => 'Muscle',
(int) 84 => 'Ovary',
(int) 85 => 'Placenta',
(int) 86 => 'Testis',
(int) 87 => 'Adipose',
(int) 88 => 'Adrenal',
(int) 89 => 'Bladder',
(int) 90 => 'Brain',
(int) 91 => 'Breast',
(int) 92 => 'Colon',
(int) 93 => 'Heart',
(int) 94 => 'Kidney',
(int) 95 => 'Liver',
(int) 96 => 'Lung',
(int) 97 => 'Muscle',
(int) 98 => 'Ovary',
(int) 99 => 'Placenta',
(int) 100 => 'Testis',
(int) 101 => 'Adrenal',
(int) 102 => 'Breast',
(int) 103 => 'Lung',
(int) 104 => 'Testis',
(int) 105 => 'Breast',
(int) 106 => 'Heart',
(int) 107 => 'Muscle',
(int) 108 => 'Testis',
(int) 109 => 'Liver',
(int) 110 => 'Testis',
(int) 111 => 'Adrenal',
(int) 112 => 'Bladder',
(int) 113 => 'Brain',
(int) 114 => 'Breast',
(int) 115 => 'Colon',
(int) 116 => 'Kidney',
(int) 117 => 'Liver',
(int) 118 => 'Muscle',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Bladder',
(int) 123 => 'Brain',
(int) 124 => 'Heart',
(int) 125 => 'Liver',
(int) 126 => 'Ovary',
(int) 127 => 'Placenta',
(int) 128 => 'Adipose',
(int) 129 => 'Bladder',
(int) 130 => 'Brain',
(int) 131 => 'Breast',
(int) 132 => 'Liver',
(int) 133 => 'Lung',
(int) 134 => 'Muscle',
(int) 135 => 'Ovary',
(int) 136 => 'Placenta',
(int) 137 => 'Testis',
(int) 138 => 'Bladder',
(int) 139 => 'Kidney',
(int) 140 => 'Liver',
(int) 141 => 'Lung'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007JW_0003',
'tax_id' => '7955',
'chromosome' => '24',
'seq_start' => '17688673',
'seq_end' => '17688888',
'region_length' => '215',
'region_type' => 'UCNEbase',
'el_id' => 'MLLT10'
)
)
$gene_el = array(
'ENSMUST00000175073' => array(
'Bladder' => array(
'average_FPKM' => '19.205',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '823.650',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '206.039',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '542.565',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000092814'
$is_first = false
$tran_el = array(
'Bladder' => array(
'average_FPKM' => '19.205',
'stddev_FPKM' => '0.00'
),
'Kidney' => array(
'average_FPKM' => '823.650',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '206.039',
'stddev_FPKM' => '0.00'
),
'Lung' => array(
'average_FPKM' => '542.565',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000175073'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108