C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: growth factor independent 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026815 Gfi1b 10090 - 2:28609450-28621982 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028156 Gfi1b-001 28609455-28621945 protein_coding
  ENSMUST00000145690 Gfi1b-002 28614791-28621982 processed_transcript
  ENSMUST00000155686 Gfi1b-003 28614784-28615405 processed_transcript
  ENSMUST00000164290 Gfi1b-201 28609450-28621982 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000028156ENSMUST00000145690ENSMUST00000164290
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000028156 0.124±0.01 0.069±0.05 0.044±0.00 0.007±0.00 0.463±0.21 0.397±0.14 0.032±0.00 0.021±0.00 32.998±22.13 0.171±0.08 0.106±0.06 0.606±0.56 0.044±0.00
ENSMUST00000145690 N/A N/A 0.048±0.00 N/A N/A 0.996±0.00 N/A 0.195±0.11 N/A N/A 0.205±0.00 0.707±0.44 N/A
ENSMUST00000164290 0.120±0.09 0.050±0.03 0.059±0.00 0.045±0.03 0.324±0.08 0.173±0.06 0.025±0.00 0.032±0.00 15.676±6.83 0.126±0.04 0.090±0.01 0.807±0.31 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000H4 CIL_0000H4_0002 CGP 2:28609450-28691167

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001085 IEA RNA polymerase II transcription factor binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0016363 IEA nuclear matrix
GO:0030854 IDA positive regulation of granulocyte differentiation
GO:0045646 IMP regulation of erythrocyte differentiation
GO:0046872 IEA metal ion binding
GO:0051572 IMP negative regulation of histone H3-K4 methylation
GO:0051574 IMP positive regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079947 gfi1b growth factor independent 1B transcription repressor protein_coding Danio_rerio
ENSG00000165702 GFI1B growth factor independent 1B transcription repressor protein_coding Homo_sapiens

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