C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: olfactomedin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028177 Olfm1-001 ENSMUSG00000026833 10090 + 2:28205659-28230736 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028177
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028177 7.421±0.04 5.915±2.25 1.826±0.00 14.895±0.00 3.277±0.95 4.582±1.02 3.686±1.02 8.844±1.06 1.082±0.32 3.077±0.12 0.773±0.39 9.562±4.37 0.812±0.42 1.179±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ET CIL_0001ET_0002 CGP 2:28076378-28230736

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IDA beta-amyloid binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0051259 IDA protein oligomerization
GO:1902003 IDA regulation of beta-amyloid formation
GO:1902430 IDA negative regulation of beta-amyloid formation
GO:2001223 IDA negative regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000140478 olfm1b-003 protein_coding Danio_rerio 0 837
ENSDART00000139493 olfm1b-004 protein_coding Danio_rerio 0 333
ENST00000252854 OLFM1-001 protein_coding Homo_sapiens 0 2211
ENST00000277415 OLFM1-002 protein_coding Homo_sapiens 0 457
ENST00000339720 OLFM1-010 protein_coding Homo_sapiens 0 571
ENST00000371793 OLFM1-004 protein_coding Homo_sapiens 0 2529
ENST00000371796 OLFM1-003 protein_coding Homo_sapiens 0 2217
ENST00000392991 OLFM1-009 protein_coding Homo_sapiens 0 917
ENST00000539529 OLFM1-011 protein_coding Homo_sapiens 0 761
ENST00000539877 OLFM1-013 protein_coding Homo_sapiens 0 917
ENST00000545657 OLFM1-012 protein_coding Homo_sapiens 0 414

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