C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: olfactomedin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113920 Olfm1-002 ENSMUSG00000026833 10090 + 2:28192992-28230462 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113920
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113920 23.379±7.36 5.159±0.11 51.552±14.18 10.705±2.40 3.422±1.56 2.869±0.56 4.484±0.71 0.569±0.25 7.745±0.78 0.681±0.00 5.731±1.53 0.639±0.41 0.162±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ET CIL_0001ET_0002 CGP 2:28076378-28230736

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IDA beta-amyloid binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0051259 IDA protein oligomerization
GO:1902003 IDA regulation of beta-amyloid formation
GO:1902430 IDA negative regulation of beta-amyloid formation
GO:2001223 IDA negative regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252854 OLFM1-001 protein_coding Homo_sapiens 0 2283
ENST00000277415 OLFM1-002 protein_coding Homo_sapiens 0 725
ENST00000339720 OLFM1-010 protein_coding Homo_sapiens 0 568
ENST00000371793 OLFM1-004 protein_coding Homo_sapiens 0 2071
ENST00000371796 OLFM1-003 protein_coding Homo_sapiens 0 2071
ENST00000392991 OLFM1-009 protein_coding Homo_sapiens 0 457
ENST00000539529 OLFM1-011 protein_coding Homo_sapiens 0 761
ENST00000539877 OLFM1-013 protein_coding Homo_sapiens 0 917
ENST00000545657 OLFM1-012 protein_coding Homo_sapiens 0 414

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