C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: torsin family 1, member B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026848 Tor1b 10090 + 2:30952959-30959015 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028199 Tor1b-001 30952959-30959015 protein_coding
  ENSMUST00000132514 Tor1b-006 30953752-30956873 nonsense_mediated_decay
  ENSMUST00000133544 Tor1b-003 30952979-30959011 retained_intron
  ENSMUST00000135507 Tor1b-004 30952991-30956494 nonsense_mediated_decay
  ENSMUST00000155213 Tor1b-005 30953172-30956985 retained_intron
  ENSMUST00000156711 Tor1b-002 30953187-30959012 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028199ENSMUST00000132514ENSMUST00000133544ENSMUST00000135507ENSMUST00000156711
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028199 15.590±1.90 18.153±5.52 14.335±0.68 3.938±0.00 12.705±1.41 11.028±1.99 6.047±0.56 9.292±0.76 7.508±0.88 13.736±0.38 6.079±0.76 15.261±4.21 8.758±4.12 4.489±0.68
ENSMUST00000132514 N/A N/A N/A 7.097±0.00 N/A N/A N/A N/A N/A N/A N/A 25.808±0.00 N/A 6.766±0.00
ENSMUST00000133544 4.738±2.27 4.735±0.31 4.945±0.99 5.836±3.28 4.226±0.69 4.281±1.17 1.907±0.08 2.270±0.32 3.923±1.63 4.032±0.74 1.472±0.16 5.457±1.53 2.531±1.22 1.213±0.51
ENSMUST00000135507 N/A 17.864±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156711 N/A N/A N/A 1.583±0.00 N/A N/A 1.358±0.04 N/A N/A N/A N/A 5.483±0.77 4.738±1.73 0.842±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UB CIL_0005UB_0002 CGP 2:30889471-30959015
CIL_0002LZ CIL_0002LZ_0004 CGP 2:30952959-30967933

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0005788 IDA endoplasmic reticulum lumen
GO:0006200 ISS ATP catabolic process
GO:0007029 ISS endoplasmic reticulum organization
GO:0016020 IEA membrane
GO:0016887 ISS ATPase activity
GO:0051085 IEA chaperone mediated protein folding requiring cofactor
GO:0051260 IDA protein homooligomerization
GO:0070062 IEA extracellular vesicular exosome
GO:0071763 IGI nuclear membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026895 tor1l3 torsin family 1 like 3 protein_coding Danio_rerio
ENSDARG00000055856 tor1l1 torsin family 1 like 1 protein_coding Danio_rerio
ENSDARG00000077950 tor1 torsin family 1 protein_coding Danio_rerio
ENSDARG00000090741 AL954146.4 Uncharacterized protein protein_coding Danio_rerio
ENSG00000136816 TOR1B torsin family 1, member B (torsin B) protein_coding Homo_sapiens

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