C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: torsin family 1, member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156711 Tor1b-002 ENSMUSG00000026848 10090 + 2:30953187-30959012 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartOvaryPlacentaTestisENSMUST00000156711
Transcript ID Brain Heart Ovary Placenta Testis
ENSMUST00000156711 1.583±0.00 1.358±0.04 5.483±0.77 4.738±1.73 0.842±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UB CIL_0005UB_0002 CGP 2:30889471-30959015
CIL_0002LZ CIL_0002LZ_0004 CGP 2:30952959-30967933

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005788 IDA endoplasmic reticulum lumen
GO:0051085 IEA chaperone mediated protein folding requiring cofactor
GO:0051260 IDA protein homooligomerization
GO:0071763 IGI nuclear membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259339 TOR1B-001 protein_coding Homo_sapiens 0 963
ENST00000427860 TOR1B-003 protein_coding Homo_sapiens 0 364
ENST00000486372 TOR1B-002 processed_transcript Homo_sapiens 0 364

Loading