C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: torsin family 1, member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028199 Tor1b-001 ENSMUSG00000026848 10090 + 2:30952959-30959015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028199
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028199 15.590±1.90 18.153±5.52 14.335±0.68 3.938±0.00 12.705±1.41 11.028±1.99 6.047±0.56 9.292±0.76 7.508±0.88 13.736±0.38 6.079±0.76 15.261±4.21 8.758±4.12 4.489±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UB CIL_0005UB_0002 CGP 2:30889471-30959015
CIL_0002LZ CIL_0002LZ_0004 CGP 2:30952959-30967933

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0005788 IDA endoplasmic reticulum lumen
GO:0006200 ISS ATP catabolic process
GO:0007029 ISS endoplasmic reticulum organization
GO:0016020 IEA membrane
GO:0016887 ISS ATPase activity
GO:0051085 IEA chaperone mediated protein folding requiring cofactor
GO:0051260 IDA protein homooligomerization
GO:0070062 IEA extracellular vesicular exosome
GO:0071763 IGI nuclear membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259339 TOR1B-001 protein_coding Homo_sapiens 0 1094
ENST00000427860 TOR1B-003 protein_coding Homo_sapiens 0 472
ENST00000486372 TOR1B-002 processed_transcript Homo_sapiens 0 488

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