C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cDNA sequence BC005624
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026851 BC005624 10090 - 2:30972833-30982201 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028205 BC005624-001 30972833-30981941 protein_coding
  ENSMUST00000152007 BC005624-003 30975892-30980506 processed_transcript
  ENSMUST00000156325 BC005624-002 30980903-30982201 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028205ENSMUST00000152007ENSMUST00000156325
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028205 14.446±1.30 5.953±3.67 40.322±3.24 67.189±40.55 7.837±3.30 6.683±1.42 12.549±0.83 19.857±2.02 20.239±11.22 19.855±2.67 15.765±1.23 22.899±26.94 40.615±17.05 26.519±18.45
ENSMUST00000152007 3.291±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.773±1.63 N/A 14.684±11.24
ENSMUST00000156325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.367±2.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UA CIL_0005UA_0002 CGP 2:30960627-30982201
CIL_0002M0 CIL_0002M0_0003 CGP 2:30972833-31023586

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002220 C5H9orf78 chromosome 9 open reading frame 78 protein_coding Danio_rerio
ENSG00000136819 C9orf78 chromosome 9 open reading frame 78 protein_coding Homo_sapiens

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