C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002M0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000002220-ENSDARG00000027501 CGP 7955 5:34913576-34948192
GeneTranscriptPositionBiotype
ENSDARG00000002220 (C5H9orf78)
chromosome 9 open reading frame 78 		ENSDART00000015076 (C5H9orf78-201) 34913576-34916250 protein_coding
ENSDARG00000027501 (usp20)
ubiquitin specific protease 20 		ENSDART00000006021 (usp20-201) 34916602-34948192 protein_coding
ENSDART00000030969 (usp20-202) 34916598-34948192 protein_coding
ENSDART00000097945 (usp20-203) 34918921-34943403 protein_coding
ENSDART00000111946 (usp20-204) 34916602-34925790 protein_coding
ENSDART00000122077 (usp20-205) 34916602-34948192 protein_coding
CIL_0002M0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136819-ENSG00000136878 CGP 9606 9:129827290-129881838
GeneTranscriptPositionBiotype
ENSG00000136819 (C9orf78)
chromosome 9 open reading frame 78 		ENST00000372447 (C9orf78-007) 129827290-129835275 protein_coding
ENST00000461349 (C9orf78-006) 129827968-129835254 processed_transcript
ENST00000461539 (C9orf78-004) 129829279-129835863 processed_transcript
ENST00000461762 (C9orf78-002) 129828428-129834547 processed_transcript
ENST00000480023 (C9orf78-001) 129828442-129830685 processed_transcript
ENST00000492991 (C9orf78-005) 129830935-129835281 processed_transcript
ENST00000495934 (C9orf78-003) 129831410-129833517 processed_transcript
ENST00000615599 (C9orf78-201) 129827297-129835281 protein_coding
ENSG00000136878 (USP20)
ubiquitin specific peptidase 20 		ENST00000315480 (USP20-003) 129835470-129881828 protein_coding
ENST00000358355 (USP20-002) 129835478-129881828 protein_coding
ENST00000372429 (USP20-001) 129835446-129881838 protein_coding
ENST00000472108 (USP20-007) 129879373-129881828 processed_transcript
ENST00000474895 (USP20-006) 129868322-129878437 processed_transcript
ENST00000491053 (USP20-004) 129834698-129852636 processed_transcript
ENST00000491731 (USP20-008) 129868367-129870152 processed_transcript
ENST00000494971 (USP20-005) 129835417-129858547 processed_transcript
ENST00000496927 (USP20-009) 129875597-129880518 processed_transcript
CIL_0002M0_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026851-ENSMUSG00000026854 CGP 10090 2:30972833-31023586
GeneTranscriptPositionBiotype
ENSMUSG00000026851 (BC005624)
cDNA sequence BC005624 		ENSMUST00000028205 (BC005624-001) 30972833-30981941 protein_coding
ENSMUST00000152007 (BC005624-003) 30975892-30980506 processed_transcript
ENSMUST00000156325 (BC005624-002) 30980903-30982201 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002M0_0001ENSDARG00000002220ENSDART00000015076ENSDARG00000027501ENSDART00000006021ENSDART00000030969ENSDART00000097945ENSDART00000111946ENSDART00000122077CIL_0002M0_0002ENSG00000136819ENST00000372447ENST00000461349ENST00000461539ENST00000461762ENST00000480023ENST00000492991ENST00000495934ENST00000615599ENSG00000136878ENST00000315480ENST00000358355ENST00000372429ENST00000472108ENST00000474895ENST00000491053ENST00000491731ENST00000494971ENST00000496927CIL_0002M0_0003ENSMUSG00000026851ENSMUST00000028205ENSMUST00000152007ENSMUST00000156325
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002M0_0001ENSDARG00000002220ENSDART00000015076ENSDARG00000027501ENSDART00000006021ENSDART00000030969ENSDART00000111946CIL_0002M0_0002ENSG00000136819ENST00000372447ENST00000461539ENST00000492991ENST00000615599ENSG00000136878ENST00000315480ENST00000358355ENST00000372429ENST00000472108CIL_0002M0_0003ENSMUSG00000026851ENSMUST00000028205ENSMUST00000152007ENSMUST00000156325
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002220 ENSDART00000015076 N/A N/A N/A 11.443±4.04 N/A N/A 13.868±0.50 38.616±14.55 1.217±0.00 N/A 6.245±0.00 N/A N/A N/A
ENSDARG00000027501 ENSDART00000006021 N/A N/A N/A N/A N/A N/A 1.291±0.00 1.098±0.00 0.085±0.00 N/A N/A N/A N/A N/A
ENSDART00000030969 N/A N/A N/A 19.175±2.38 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000097945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000111946 N/A N/A N/A N/A N/A N/A N/A N/A 0.155±0.00 N/A N/A N/A N/A N/A
ENSDART00000122077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136819 ENST00000372447 N/A N/A N/A 3.426±0.00 N/A 0.455±0.00 1.162±0.00 1.419±0.00 2.596±0.00 N/A N/A 2.988±0.00 9.838±0.00 N/A
ENST00000461349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461539 19.570±0.00 42.375±0.00 2.663±0.00 29.228±22.79 15.757±10.59 32.515±0.00 8.126±6.63 19.827±17.14 5.073±0.00 N/A 1.723±0.00 19.426±8.96 25.025±0.00 46.971±3.63
ENST00000461762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492991 N/A N/A 2.767±0.00 N/A N/A 1.713±0.00 N/A N/A N/A N/A 2.452±0.00 17.345±0.00 18.484±0.00 25.310±0.00
ENST00000495934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615599 15.708±0.00 35.099±0.00 1.356±0.00 21.458±0.00 10.439±7.37 25.312±0.00 12.071±0.00 14.006±12.61 19.897±0.00 13.001±9.91 18.406±0.00 18.246±5.82 16.164±4.98 26.814±0.12
ENSG00000136878 ENST00000315480 N/A N/A N/A 7.438±0.00 N/A N/A N/A N/A N/A N/A N/A 4.861±0.08 N/A N/A
ENST00000358355 N/A N/A 0.467±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372429 4.487±0.00 N/A N/A 1.441±0.00 N/A 0.815±0.00 N/A 0.528±0.00 1.482±0.00 8.134±0.00 5.587±0.00 6.191±0.00 4.804±1.29 7.943±0.00
ENST00000472108 N/A 20.567±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026851 ENSMUST00000028205 14.446±1.30 5.953±3.67 40.322±3.24 67.189±40.55 7.837±3.30 6.683±1.42 12.549±0.83 19.857±2.02 20.239±11.22 19.855±2.67 15.765±1.23 22.899±26.94 40.615±17.05 26.519±18.45
ENSMUST00000152007 3.291±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.773±1.63 N/A 14.684±11.24
ENSMUST00000156325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.367±2.09

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