C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002M0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000002220-ENSDARG00000027501 CGP 7955 5:34913576-34948192
GeneTranscriptPositionBiotype
ENSDARG00000002220 (C5H9orf78)
chromosome 9 open reading frame 78 		ENSDART00000015076 (C5H9orf78-201) 34913576-34916250 protein_coding
ENSDARG00000027501 (usp20)
ubiquitin specific protease 20 		ENSDART00000006021 (usp20-201) 34916602-34948192 protein_coding
ENSDART00000030969 (usp20-202) 34916598-34948192 protein_coding
ENSDART00000097945 (usp20-203) 34918921-34943403 protein_coding
ENSDART00000111946 (usp20-204) 34916602-34925790 protein_coding
ENSDART00000122077 (usp20-205) 34916602-34948192 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0002M0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136819-ENSG00000136878 CGP 9606 9:129827290-129881838
GeneTranscriptPositionBiotype
ENSG00000136819 (C9orf78)
chromosome 9 open reading frame 78 		ENST00000372447 (C9orf78-007) 129827290-129835275 protein_coding
ENST00000461349 (C9orf78-006) 129827968-129835254 processed_transcript
ENST00000461539 (C9orf78-004) 129829279-129835863 processed_transcript
ENST00000461762 (C9orf78-002) 129828428-129834547 processed_transcript
ENST00000480023 (C9orf78-001) 129828442-129830685 processed_transcript
ENST00000492991 (C9orf78-005) 129830935-129835281 processed_transcript
ENST00000495934 (C9orf78-003) 129831410-129833517 processed_transcript
ENST00000615599 (C9orf78-201) 129827297-129835281 protein_coding
ENSG00000136878 (USP20)
ubiquitin specific peptidase 20 		ENST00000315480 (USP20-003) 129835470-129881828 protein_coding
ENST00000358355 (USP20-002) 129835478-129881828 protein_coding
ENST00000372429 (USP20-001) 129835446-129881838 protein_coding
ENST00000472108 (USP20-007) 129879373-129881828 processed_transcript
ENST00000474895 (USP20-006) 129868322-129878437 processed_transcript
ENST00000491053 (USP20-004) 129834698-129852636 processed_transcript
ENST00000491731 (USP20-008) 129868367-129870152 processed_transcript
ENST00000494971 (USP20-005) 129835417-129858547 processed_transcript
ENST00000496927 (USP20-009) 129875597-129880518 processed_transcript

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0002M0_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026851-ENSMUSG00000026854 CGP 10090 2:30972833-31023586
GeneTranscriptPositionBiotype
ENSMUSG00000026851 (BC005624)
cDNA sequence BC005624 		ENSMUST00000028205 (BC005624-001) 30972833-30981941 protein_coding
ENSMUST00000152007 (BC005624-003) 30975892-30980506 processed_transcript
ENSMUST00000156325 (BC005624-002) 30980903-30982201 processed_transcript

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002M0_0001ENSDARG00000002220ENSDART00000015076ENSDARG00000027501ENSDART00000006021ENSDART00000030969ENSDART00000097945ENSDART00000111946ENSDART00000122077CIL_0002M0_0002ENSG00000136819ENST00000372447ENST00000461349ENST00000461539ENST00000461762ENST00000480023ENST00000492991ENST00000495934ENST00000615599ENSG00000136878ENST00000315480ENST00000358355ENST00000372429ENST00000472108ENST00000474895ENST00000491053ENST00000491731ENST00000494971ENST00000496927CIL_0002M0_0003ENSMUSG00000026851ENSMUST00000028205ENSMUST00000152007ENSMUST00000156325
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002M0_0001ENSDARG00000002220ENSDART00000015076ENSDARG00000027501ENSDART00000006021ENSDART00000030969ENSDART00000111946CIL_0002M0_0002ENSG00000136819ENST00000372447ENST00000461539ENST00000492991ENST00000615599ENSG00000136878ENST00000315480ENST00000358355ENST00000372429ENST00000472108CIL_0002M0_0003ENSMUSG00000026851ENSMUST00000028205ENSMUST00000152007ENSMUST00000156325
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002220 ENSDART00000015076 N/A N/A N/A 11.443±4.04 N/A N/A 13.868±0.50 38.616±14.55 1.217±0.00 N/A 6.245±0.00 N/A N/A N/A
ENSDARG00000027501 ENSDART00000006021 N/A N/A N/A N/A N/A N/A 1.291±0.00 1.098±0.00 0.085±0.00 N/A N/A N/A N/A N/A
ENSDART00000030969 N/A N/A N/A 19.175±2.38 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000097945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000111946 N/A N/A N/A N/A N/A N/A N/A N/A 0.155±0.00 N/A N/A N/A N/A N/A
ENSDART00000122077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136819 ENST00000372447 N/A N/A N/A 3.426±0.00 N/A 0.455±0.00 1.162±0.00 1.419±0.00 2.596±0.00 N/A N/A 2.988±0.00 9.838±0.00 N/A
ENST00000461349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461539 19.570±0.00 42.375±0.00 2.663±0.00 29.228±22.79 15.757±10.59 32.515±0.00 8.126±6.63 19.827±17.14 5.073±0.00 N/A 1.723±0.00 19.426±8.96 25.025±0.00 46.971±3.63
ENST00000461762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492991 N/A N/A 2.767±0.00 N/A N/A 1.713±0.00 N/A N/A N/A N/A 2.452±0.00 17.345±0.00 18.484±0.00 25.310±0.00
ENST00000495934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615599 15.708±0.00 35.099±0.00 1.356±0.00 21.458±0.00 10.439±7.37 25.312±0.00 12.071±0.00 14.006±12.61 19.897±0.00 13.001±9.91 18.406±0.00 18.246±5.82 16.164±4.98 26.814±0.12
ENSG00000136878 ENST00000315480 N/A N/A N/A 7.438±0.00 N/A N/A N/A N/A N/A N/A N/A 4.861±0.08 N/A N/A
ENST00000358355 N/A N/A 0.467±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372429 4.487±0.00 N/A N/A 1.441±0.00 N/A 0.815±0.00 N/A 0.528±0.00 1.482±0.00 8.134±0.00 5.587±0.00 6.191±0.00 4.804±1.29 7.943±0.00
ENST00000472108 N/A 20.567±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026851 ENSMUST00000028205 14.446±1.30 5.953±3.67 40.322±3.24 67.189±40.55 7.837±3.30 6.683±1.42 12.549±0.83 19.857±2.02 20.239±11.22 19.855±2.67 15.765±1.23 22.899±26.94 40.615±17.05 26.519±18.45
ENSMUST00000152007 3.291±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.773±1.63 N/A 14.684±11.24
ENSMUST00000156325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.367±2.09

Loading