C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: integrin beta 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026971 Itgb6 10090 - 2:60598292-60722643 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028348 Itgb6-001 60600231-60722643 protein_coding
  ENSMUST00000059888 Itgb6-002 60598292-60673711 protein_coding
  ENSMUST00000112517 Itgb6-003 60604245-60722643 protein_coding
  ENSMUST00000133887 Itgb6-006 60634431-60673693 processed_transcript
  ENSMUST00000142696 Itgb6-009 60693445-60705578 processed_transcript
  ENSMUST00000145009 Itgb6-005 60669248-60673703 processed_transcript
  ENSMUST00000147906 Itgb6-008 60674644-60705601 processed_transcript
  ENSMUST00000151035 Itgb6-007 60653048-60673754 processed_transcript
  ENSMUST00000154764 Itgb6-004 60605139-60673726 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000028348ENSMUST00000059888ENSMUST00000133887ENSMUST00000154764
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000028348 0.410±0.00 N/A N/A N/A 0.542±0.29 N/A 1.511±0.27 N/A 0.014±0.00 N/A N/A N/A N/A
ENSMUST00000059888 0.014±0.00 0.026±0.00 1.218±0.28 0.012±0.00 0.267±0.07 1.578±0.61 N/A 2.701±0.24 0.009±0.01 2.720±0.97 0.361±0.20 0.286±0.13 0.017±0.00
ENSMUST00000133887 N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A
ENSMUST00000154764 N/A N/A N/A 0.040±0.00 0.618±0.31 3.485±1.89 1.609±0.00 8.167±3.80 0.031±0.00 7.223±0.43 0.753±0.37 0.665±0.00 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TX CIL_0005TX_0002 CGP 2:60417543-60722643
CIL_0005TW CIL_0005TW_0002 CGP 2:60598292-60963192

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005178 IPI integrin binding
GO:0006954 IMP inflammatory response
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0009897 IDA external side of plasma membrane
GO:0043235 ISO receptor complex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002494 itgb6 integrin, beta 6 protein_coding Danio_rerio
ENSG00000115221 ITGB6 integrin, beta 6 protein_coding Homo_sapiens

Loading