C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: integrin, beta 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115221 ITGB6 9606 - 2:160099666-160271888 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000283249 ITGB6-001 160099666-160200301 protein_coding
  ENST00000409583 ITGB6-002 160099671-160200304 nonsense_mediated_decay
  ENST00000409872 ITGB6-007 160101736-160200304 protein_coding
  ENST00000409967 ITGB6-004 160101685-160200258 protein_coding
  ENST00000428609 ITGB6-006 160101636-160200252 protein_coding
  ENST00000459712 ITGB6-009 160257718-160271880 processed_transcript
  ENST00000475438 ITGB6-003 160101565-160112110 processed_transcript
  ENST00000477514 ITGB6-010 160257840-160271249 processed_transcript
  ENST00000485635 ITGB6-005 160141981-160271888 processed_transcript
  ENST00000498478 ITGB6-008 160200773-160253849 processed_transcript
  ENST00000620391 ITGB6-201 160099667-160200313 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283249ENST00000409583ENST00000409872ENST00000409967ENST00000428609ENST00000459712ENST00000477514ENST00000498478ENST00000620391
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283249 N/A N/A 1.214±0.00 N/A N/A N/A 0.217±0.18 7.481±0.00 N/A 1.569±0.54 0.945±0.00 0.137±0.04 3.261±1.91 N/A
ENST00000409583 N/A N/A N/A N/A 1.110±0.00 0.692±0.00 0.199±0.00 13.281±0.00 0.495±0.00 1.449±0.00 N/A 0.688±0.56 1.591±0.00 0.185±0.00
ENST00000409872 N/A N/A 0.812±0.00 N/A N/A N/A 0.087±0.00 N/A 0.842±0.00 N/A 2.469±2.27 1.996±0.00 N/A N/A
ENST00000409967 N/A N/A N/A N/A N/A 0.578±0.00 0.153±0.00 N/A 0.006±0.00 N/A N/A N/A N/A N/A
ENST00000428609 N/A N/A N/A N/A 0.895±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459712 0.433±0.00 0.120±0.00 N/A 0.907±0.00 N/A N/A 1.696±0.00 N/A N/A N/A 1.479±0.00 N/A N/A 17.652±2.82
ENST00000477514 0.749±0.00 N/A N/A 0.468±0.00 N/A N/A 4.080±0.00 0.910±0.00 N/A N/A 1.382±0.00 N/A N/A N/A
ENST00000498478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.782±0.00 N/A N/A N/A
ENST00000620391 N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 0.003±0.00 2.413±0.00 N/A 1.153±1.20 1.769±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TX CIL_0005TX_0001 CGP 2:159932006-160271888
CIL_0005TW CIL_0005TW_0001 CGP 2:160099666-160493794

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001618 IEA virus receptor activity
GO:0004872 IEA receptor activity
GO:0005178 IEA integrin binding
GO:0005886 TAS plasma membrane
GO:0006954 IEA inflammatory response
GO:0007155 TAS cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IEA integrin complex
GO:0009615 IEA response to virus
GO:0009897 IEA external side of plasma membrane
GO:0016020 IEA membrane
GO:0016032 IEA viral process
GO:0030198 TAS extracellular matrix organization
GO:0043235 IDA receptor complex
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002494 itgb6 integrin, beta 6 protein_coding Danio_rerio
ENSMUSG00000026971 Itgb6 integrin beta 6 protein_coding Mus_musculus

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