C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005TW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115221-ENSG00000153250 CGP 9606 2:160099666-160493794
GeneTranscriptPositionBiotype
ENSG00000115221 (ITGB6)
integrin, beta 6 		ENST00000283249 (ITGB6-001) 160099666-160200301 protein_coding
ENST00000409583 (ITGB6-002) 160099671-160200304 nonsense_mediated_decay
ENST00000409872 (ITGB6-007) 160101736-160200304 protein_coding
ENST00000409967 (ITGB6-004) 160101685-160200258 protein_coding
ENST00000428609 (ITGB6-006) 160101636-160200252 protein_coding
ENST00000459712 (ITGB6-009) 160257718-160271880 processed_transcript
ENST00000475438 (ITGB6-003) 160101565-160112110 processed_transcript
ENST00000477514 (ITGB6-010) 160257840-160271249 processed_transcript
ENST00000485635 (ITGB6-005) 160141981-160271888 processed_transcript
ENST00000498478 (ITGB6-008) 160200773-160253849 processed_transcript
ENST00000620391 (ITGB6-201) 160099667-160200313 protein_coding
ENSG00000153250 (RBMS1)
RNA binding motif, single stranded interacting protein 1 		ENST00000348849 (RBMS1-001) 160272151-160493794 protein_coding
ENST00000392753 (RBMS1-201) 160272152-160367526 protein_coding
ENST00000409075 (RBMS1-006) 160274460-160408609 protein_coding
ENST00000409289 (RBMS1-009) 160274460-160416178 protein_coding
ENST00000409972 (RBMS1-007) 160274520-160407889 protein_coding
ENST00000428519 (RBMS1-015) 160303408-160416178 protein_coding
ENST00000464200 (RBMS1-011) 160275399-160277372 retained_intron
ENST00000474147 (RBMS1-003) 160274460-160279766 retained_intron
ENST00000474820 (RBMS1-002) 160272151-160493379 processed_transcript
ENST00000475103 (RBMS1-010) 160274480-160276685 processed_transcript
ENST00000477486 (RBMS1-014) 160366913-160492969 retained_intron
ENST00000477965 (RBMS1-004) 160274540-160283100 retained_intron
ENST00000490637 (RBMS1-008) 160274518-160284867 retained_intron
ENST00000491781 (RBMS1-005) 160284261-160493482 retained_intron
ENST00000492283 (RBMS1-012) 160302504-160318203 processed_transcript
CIL_0005TW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026971-ENSMUSG00000026970 CGP 10090 2:60598292-60963192
GeneTranscriptPositionBiotype
ENSMUSG00000026970 (Rbms1)
RNA binding motif, single stranded interacting protein 1 		ENSMUST00000028347 (Rbms1-001) 60750193-60963192 protein_coding
ENSMUST00000112509 (Rbms1-002) 60752722-60881470 protein_coding
ENSMUST00000123046 (Rbms1-004) 60753560-60762321 processed_transcript
ENSMUST00000125485 (Rbms1-008) 60888212-60888508 processed_transcript
ENSMUST00000128866 (Rbms1-006) 60888424-60888996 processed_transcript
ENSMUST00000132529 (Rbms1-007) 60842297-60889030 processed_transcript
ENSMUST00000151846 (Rbms1-009) 60842297-60888055 processed_transcript
ENSMUST00000153555 (Rbms1-003) 60755416-60780941 processed_transcript
ENSMUST00000164147 (Rbms1-201) 60751953-60881438 protein_coding
ENSMUSG00000026971 (Itgb6)
integrin beta 6 		ENSMUST00000028348 (Itgb6-001) 60600231-60722643 protein_coding
ENSMUST00000059888 (Itgb6-002) 60598292-60673711 protein_coding
ENSMUST00000112517 (Itgb6-003) 60604245-60722643 protein_coding
ENSMUST00000133887 (Itgb6-006) 60634431-60673693 processed_transcript
ENSMUST00000142696 (Itgb6-009) 60693445-60705578 processed_transcript
ENSMUST00000145009 (Itgb6-005) 60669248-60673703 processed_transcript
ENSMUST00000147906 (Itgb6-008) 60674644-60705601 processed_transcript
ENSMUST00000151035 (Itgb6-007) 60653048-60673754 processed_transcript
ENSMUST00000154764 (Itgb6-004) 60605139-60673726 protein_coding
ENSMUSG00000080547 (Gm22712)
predicted gene, 22712 		ENSMUST00000116897 (Gm22712-201) 60954060-60954133 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005TW_0001ENSG00000115221ENST00000283249ENST00000409583ENST00000409872ENST00000409967ENST00000428609ENST00000459712ENST00000475438ENST00000477514ENST00000485635ENST00000498478ENST00000620391ENSG00000153250ENST00000348849ENST00000392753ENST00000409075ENST00000409289ENST00000409972ENST00000428519ENST00000464200ENST00000474147ENST00000474820ENST00000475103ENST00000477486ENST00000477965ENST00000490637ENST00000491781ENST00000492283CIL_0005TW_0002ENSMUSG00000026970ENSMUST00000028347ENSMUST00000112509ENSMUST00000123046ENSMUST00000125485ENSMUST00000128866ENSMUST00000132529ENSMUST00000151846ENSMUST00000153555ENSMUST00000164147ENSMUSG00000026971ENSMUST00000028348ENSMUST00000059888ENSMUST00000112517ENSMUST00000133887ENSMUST00000142696ENSMUST00000145009ENSMUST00000147906ENSMUST00000151035ENSMUST00000154764ENSMUSG00000080547ENSMUST00000116897
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005TW_0001ENSG00000115221ENST00000283249ENST00000409583ENST00000409872ENST00000409967ENST00000428609ENST00000459712ENST00000477514ENST00000498478ENST00000620391ENSG00000153250ENST00000348849ENST00000392753ENST00000409289ENST00000409972ENST00000474147ENST00000474820ENST00000490637CIL_0005TW_0002ENSMUSG00000026970ENSMUST00000028347ENSMUST00000112509ENSMUST00000123046ENSMUST00000153555ENSMUST00000164147ENSMUSG00000026971ENSMUST00000028348ENSMUST00000059888ENSMUST00000133887ENSMUST00000154764ENSMUSG00000080547ENSMUST00000116897
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115221 ENST00000283249 N/A N/A 1.214±0.00 N/A N/A N/A 0.217±0.18 7.481±0.00 N/A 1.569±0.54 0.945±0.00 0.137±0.04 3.261±1.91 N/A
ENST00000409583 N/A N/A N/A N/A 1.110±0.00 0.692±0.00 0.199±0.00 13.281±0.00 0.495±0.00 1.449±0.00 N/A 0.688±0.56 1.591±0.00 0.185±0.00
ENST00000409872 N/A N/A 0.812±0.00 N/A N/A N/A 0.087±0.00 N/A 0.842±0.00 N/A 2.469±2.27 1.996±0.00 N/A N/A
ENST00000409967 N/A N/A N/A N/A N/A 0.578±0.00 0.153±0.00 N/A 0.006±0.00 N/A N/A N/A N/A N/A
ENST00000428609 N/A N/A N/A N/A 0.895±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459712 0.433±0.00 0.120±0.00 N/A 0.907±0.00 N/A N/A 1.696±0.00 N/A N/A N/A 1.479±0.00 N/A N/A 17.652±2.82
ENST00000475438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477514 0.749±0.00 N/A N/A 0.468±0.00 N/A N/A 4.080±0.00 0.910±0.00 N/A N/A 1.382±0.00 N/A N/A N/A
ENST00000485635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.782±0.00 N/A N/A N/A
ENST00000620391 N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 0.003±0.00 2.413±0.00 N/A 1.153±1.20 1.769±0.00 N/A
ENSG00000153250 ENST00000348849 8.518±0.00 3.834±0.00 N/A 0.414±0.00 4.629±0.00 2.616±0.00 2.669±1.56 2.379±0.00 2.093±0.00 10.760±0.00 1.252±1.11 3.120±0.49 10.185±0.00 3.124±0.00
ENST00000392753 N/A 4.060±0.00 1.068±0.00 0.645±0.00 3.355±0.00 N/A 1.902±1.18 2.992±0.00 2.170±1.55 5.815±0.00 1.442±0.00 4.620±0.55 16.665±10.30 3.238±0.00
ENST00000409075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409289 N/A N/A N/A N/A N/A N/A 2.536±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000409972 N/A N/A 1.870±0.00 1.297±0.00 3.949±0.00 N/A N/A N/A 5.280±0.00 N/A 0.879±0.00 6.485±0.41 43.338±0.00 4.929±0.00
ENST00000428519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474147 N/A N/A N/A N/A N/A N/A 1.364±0.00 1.155±0.00 N/A 3.763±0.00 N/A N/A N/A N/A
ENST00000474820 N/A N/A N/A N/A N/A 1.899±0.00 N/A 2.220±0.00 N/A N/A N/A N/A N/A N/A
ENST00000475103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490637 N/A N/A N/A N/A N/A N/A 0.973±0.00 N/A N/A 4.140±0.00 0.220±0.00 N/A N/A N/A
ENST00000491781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026970 ENSMUST00000028347 12.009±2.89 6.783±0.90 12.030±0.37 5.945±3.90 9.187±0.83 4.743±0.66 7.700±1.09 7.639±1.68 4.536±0.67 20.475±1.76 1.785±0.62 8.560±3.75 18.294±1.96 8.118±0.00
ENSMUST00000112509 17.714±2.76 12.799±0.00 N/A 5.354±0.00 14.205±4.97 9.846±3.83 6.399±1.36 5.164±1.47 3.571±0.51 30.313±11.20 2.425±0.00 20.232±11.15 10.945±0.00 N/A
ENSMUST00000123046 28.786±1.83 21.759±0.00 N/A N/A 46.385±6.83 15.614±3.36 12.396±3.55 15.367±3.46 14.471±3.14 56.587±5.50 N/A 39.050±5.65 N/A 53.278±15.05
ENSMUST00000125485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153555 N/A N/A N/A N/A 18.248±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 24.292±8.84
ENSMUST00000164147 N/A 14.316±1.00 N/A 2.167±0.00 11.657±3.27 3.392±0.00 1.992±0.00 4.209±0.58 2.276±0.13 15.344±1.66 N/A 16.313±6.86 9.113±1.21 3.654±2.51
ENSMUSG00000026971 ENSMUST00000028348 0.410±0.00 N/A N/A N/A 0.542±0.29 N/A 1.511±0.27 N/A 0.014±0.00 N/A N/A N/A N/A N/A
ENSMUST00000059888 0.014±0.00 0.026±0.00 1.218±0.28 0.012±0.00 0.267±0.07 1.578±0.61 N/A 2.701±0.24 0.009±0.01 2.720±0.97 N/A 0.361±0.20 0.286±0.13 0.017±0.00
ENSMUST00000112517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133887 N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A
ENSMUST00000142696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147906 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154764 N/A N/A N/A 0.040±0.00 0.618±0.31 3.485±1.89 1.609±0.00 8.167±3.80 0.031±0.00 7.223±0.43 N/A 0.753±0.37 0.665±0.00 0.013±0.00
ENSMUSG00000080547 ENSMUST00000116897 26694.000±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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