C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NCK-associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027002 Nckap1 10090 - 2:80500512-80581380 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028386 Nckap1-001 80500512-80581264 protein_coding
  ENSMUST00000111760 Nckap1-002 80500518-80581380 protein_coding
  ENSMUST00000131872 Nckap1-004 80545113-80555070 processed_transcript
  ENSMUST00000134587 Nckap1-005 80548933-80554790 processed_transcript
  ENSMUST00000154793 Nckap1-003 80506891-80525680 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028386ENSMUST00000111760ENSMUST00000134587ENSMUST00000154793
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028386 32.597±1.62 35.459±3.71 40.775±3.54 31.674±4.11 22.528±3.26 29.523±1.65 13.729±0.61 29.322±1.00 13.908±4.54 28.598±1.06 10.022±0.54 34.381±7.93 35.107±9.46 6.918±2.78
ENSMUST00000111760 N/A N/A N/A 16.138±1.88 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134587 N/A N/A N/A 162.111±0.00 N/A N/A N/A N/A N/A N/A N/A 68.004±0.00 86.701±13.47 7.437±0.00
ENSMUST00000154793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.807±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YU CIL_0000YU_0002 CGP 2:80411970-80581380
CIL_0000Q8 CIL_0000Q8_0002 CGP 2:80500512-80632361

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001756 IMP somitogenesis
GO:0001843 IMP neural tube closure
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0007354 IMP zygotic determination of anterior/posterior axis, embryo
GO:0007492 IMP endoderm development
GO:0008078 IMP mesodermal cell migration
GO:0010172 IMP embryonic body morphogenesis
GO:0010592 IEA positive regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0016601 IEA Rac protein signal transduction
GO:0030027 IDA lamellipodium
GO:0030032 IDA lamellipodium assembly
GO:0030903 IMP notochord development
GO:0030950 IMP establishment or maintenance of actin cytoskeleton polarity
GO:0031209 IEA SCAR complex
GO:0032403 IEA protein complex binding
GO:0032880 IMP regulation of protein localization
GO:0035050 IMP embryonic heart tube development
GO:0042074 IMP cell migration involved in gastrulation
GO:0045175 IDA basal protein localization
GO:0045176 IDA apical protein localization
GO:0048339 IMP paraxial mesoderm development
GO:0048340 IMP paraxial mesoderm morphogenesis
GO:0048365 IEA Rac GTPase binding
GO:0048570 IMP notochord morphogenesis
GO:0048617 IMP embryonic foregut morphogenesis
GO:0050821 IMP protein stabilization
GO:0070062 IEA extracellular vesicular exosome
GO:2000601 IEA positive regulation of Arp2/3 complex-mediated actin nucleation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060853 nckap1 NCK-associated protein 1 protein_coding Danio_rerio
ENSG00000061676 NCKAP1 NCK-associated protein 1 protein_coding Homo_sapiens

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