C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000YU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000162998-ENSG00000061676 CGP 9606 2:182833275-183038858
GeneTranscriptPositionBiotype
ENSG00000061676 (NCKAP1)
NCK-associated protein 1 		ENST00000360982 (NCKAP1-002) 182924877-183038858 protein_coding
ENST00000361354 (NCKAP1-001) 182909115-183038472 protein_coding
ENST00000471640 (NCKAP1-005) 182930725-182942119 processed_transcript
ENST00000477988 (NCKAP1-003) 182925657-182927265 retained_intron
ENST00000478449 (NCKAP1-006) 182928119-182947162 processed_transcript
ENST00000492058 (NCKAP1-004) 182934402-182935503 retained_intron
ENST00000493359 (NCKAP1-007) 182953300-182957044 retained_intron
ENST00000495619 (NCKAP1-008) 182957141-182964764 retained_intron
ENSG00000162998 (FRZB)
frizzled-related protein 		ENST00000295113 (FRZB-001) 182833275-182867162 protein_coding
ENSG00000202141 (Y_RNA)
Y RNA 		ENST00000365271 (Y_RNA.1-534) 183022859-183022971 misc_RNA
ENSG00000207178 (RNU6-1122P)
RNA, U6 small nuclear 1122, pseudogene 		ENST00000384449 (RNU6-1122P-201) 182873841-182873947 snRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000YU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027004-ENSMUSG00000027002 CGP 10090 2:80411970-80581380
GeneTranscriptPositionBiotype
ENSMUSG00000027002 (Nckap1)
NCK-associated protein 1 		ENSMUST00000028386 (Nckap1-001) 80500512-80581264 protein_coding
ENSMUST00000111760 (Nckap1-002) 80500518-80581380 protein_coding
ENSMUST00000131872 (Nckap1-004) 80545113-80555070 processed_transcript
ENSMUST00000134587 (Nckap1-005) 80548933-80554790 processed_transcript
ENSMUST00000154793 (Nckap1-003) 80506891-80525680 processed_transcript
ENSMUSG00000027004 (Frzb)
frizzled-related protein 		ENSMUST00000028389 (Frzb-001) 80411970-80447625 protein_coding
ENSMUST00000142459 (Frzb-002) 80413114-80438630 processed_transcript
ENSMUSG00000081487 (Gm13689)
predicted gene 13689 		ENSMUST00000119360 (Gm13689-001) 80549712-80550396 processed_pseudogene
ENSMUSG00000082494 (Gm13687)
predicted gene 13687 		ENSMUST00000119857 (Gm13687-001) 80499230-80499511 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000YU_0001ENSG00000061676ENST00000360982ENST00000361354ENST00000471640ENST00000477988ENST00000478449ENST00000492058ENST00000493359ENST00000495619ENSG00000162998ENST00000295113ENSG00000202141ENST00000365271ENSG00000207178ENST00000384449CIL_0000YU_0002ENSMUSG00000027002ENSMUST00000028386ENSMUST00000111760ENSMUST00000131872ENSMUST00000134587ENSMUST00000154793ENSMUSG00000027004ENSMUST00000028389ENSMUST00000142459ENSMUSG00000081487ENSMUST00000119360ENSMUSG00000082494ENSMUST00000119857
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000YU_0001ENSG00000061676ENST00000360982ENST00000361354ENSG00000162998ENST00000295113ENSG00000202141ENST00000365271ENSG00000207178ENST00000384449CIL_0000YU_0002ENSMUSG00000027002ENSMUST00000028386ENSMUST00000111760ENSMUST00000134587ENSMUST00000154793ENSMUSG00000027004ENSMUST00000028389ENSMUST00000142459ENSMUSG00000081487ENSMUST00000119360ENSMUSG00000082494ENSMUST00000119857
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000061676 ENST00000360982 30.154±0.00 23.034±0.00 8.616±0.00 41.475±9.27 19.520±8.23 31.050±18.55 23.531±18.01 22.195±14.57 15.596±6.63 21.004±4.76 22.666±17.40 25.854±2.15 14.855±2.49 24.261±9.42
ENST00000361354 N/A N/A 0.499±0.00 N/A 0.797±0.00 0.679±0.00 0.436±0.00 0.993±0.00 1.665±0.00 0.984±0.00 0.348±0.00 1.453±0.00 N/A N/A
ENST00000471640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000162998 ENST00000295113 1.912±0.00 5.524±0.00 1.591±0.00 3.176±0.23 4.025±1.22 5.539±1.88 0.897±0.33 2.701±2.44 0.970±0.50 4.931±3.77 4.518±3.83 5.434±4.21 12.942±6.67 8.675±1.42
ENSG00000202141 ENST00000365271 0.176±0.00 N/A N/A N/A N/A N/A 0.612±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000207178 ENST00000384449 N/A N/A N/A N/A N/A N/A N/A N/A 148.393±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027002 ENSMUST00000028386 32.597±1.62 35.459±3.71 40.775±3.54 31.674±4.11 22.528±3.26 29.523±1.65 13.729±0.61 29.322±1.00 13.908±4.54 28.598±1.06 10.022±0.54 34.381±7.93 35.107±9.46 6.918±2.78
ENSMUST00000111760 N/A N/A N/A 16.138±1.88 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134587 N/A N/A N/A 162.111±0.00 N/A N/A N/A N/A N/A N/A N/A 68.004±0.00 86.701±13.47 7.437±0.00
ENSMUST00000154793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.807±0.00
ENSMUSG00000027004 ENSMUST00000028389 2.895±2.34 218.174±51.15 2.443±0.05 1.708±0.68 0.886±0.68 3.398±0.96 1.478±0.13 3.904±0.57 0.438±0.12 0.213±0.08 1.174±0.33 3.428±1.44 0.540±0.67 1.694±0.45
ENSMUST00000142459 N/A N/A N/A 3.837±0.00 0.440±0.00 N/A N/A N/A 0.202±0.00 N/A 0.879±0.04 N/A 0.425±0.23 2.855±0.00
ENSMUSG00000081487 ENSMUST00000119360 0.195±0.05 0.238±0.09 0.193±0.07 0.419±0.14 0.134±0.05 0.276±0.23 0.137±0.06 0.163±0.07 0.102±0.07 0.325±0.10 0.097±0.04 0.438±0.22 0.232±0.10 0.106±0.06
ENSMUSG00000082494 ENSMUST00000119857 N/A N/A 0.510±0.12 1.897±1.63 N/A N/A 0.317±0.00 0.461±0.13 0.392±0.22 N/A N/A 0.468±0.00 0.127±0.00 0.909±0.00

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