C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NCK-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028386 Nckap1-001 ENSMUSG00000027002 10090 - 2:80500512-80581264 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028386
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028386 32.597±1.62 35.459±3.71 40.775±3.54 31.674±4.11 22.528±3.26 29.523±1.65 13.729±0.61 29.322±1.00 13.908±4.54 28.598±1.06 10.022±0.54 34.381±7.93 35.107±9.46 6.918±2.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YU CIL_0000YU_0002 CGP 2:80411970-80581380
CIL_0000Q8 CIL_0000Q8_0002 CGP 2:80500512-80632361

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001756 IMP somitogenesis
GO:0001843 IMP neural tube closure
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007354 IMP zygotic determination of anterior/posterior axis, embryo
GO:0007492 IMP endoderm development
GO:0008078 IMP mesodermal cell migration
GO:0010172 IMP embryonic body morphogenesis
GO:0016021 IEA integral component of membrane
GO:0030027 IDA lamellipodium
GO:0030032 IDA lamellipodium assembly
GO:0030903 IMP notochord development
GO:0030950 IMP establishment or maintenance of actin cytoskeleton polarity
GO:0032880 IMP regulation of protein localization
GO:0035050 IMP embryonic heart tube development
GO:0042074 IMP cell migration involved in gastrulation
GO:0045175 IDA basal protein localization
GO:0045176 IDA apical protein localization
GO:0048339 IMP paraxial mesoderm development
GO:0048340 IMP paraxial mesoderm morphogenesis
GO:0048570 IMP notochord morphogenesis
GO:0048617 IMP embryonic foregut morphogenesis
GO:0050821 IMP protein stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360982 NCKAP1-002 protein_coding Homo_sapiens 0 5173
ENST00000361354 NCKAP1-001 protein_coding Homo_sapiens 0 5256
ENST00000448218 RP13-75G22.1-001 processed_pseudogene Homo_sapiens 0 1203
ENST00000471640 NCKAP1-005 processed_transcript Homo_sapiens 0 248
ENST00000477988 NCKAP1-003 retained_intron Homo_sapiens 0 344
ENST00000478449 NCKAP1-006 processed_transcript Homo_sapiens 0 760
ENST00000495619 NCKAP1-008 retained_intron Homo_sapiens 0 436

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