C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NCK-associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000061676 NCKAP1 9606 - 2:182909115-183038858 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360982 NCKAP1-002 182924877-183038858 protein_coding
  ENST00000361354 NCKAP1-001 182909115-183038472 protein_coding
  ENST00000471640 NCKAP1-005 182930725-182942119 processed_transcript
  ENST00000477988 NCKAP1-003 182925657-182927265 retained_intron
  ENST00000478449 NCKAP1-006 182928119-182947162 processed_transcript
  ENST00000492058 NCKAP1-004 182934402-182935503 retained_intron
  ENST00000493359 NCKAP1-007 182953300-182957044 retained_intron
  ENST00000495619 NCKAP1-008 182957141-182964764 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360982ENST00000361354
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360982 30.154±0.00 23.034±0.00 8.616±0.00 41.475±9.27 19.520±8.23 31.050±18.55 23.531±18.01 22.195±14.57 15.596±6.63 21.004±4.76 22.666±17.40 25.854±2.15 14.855±2.49 24.261±9.42
ENST00000361354 N/A N/A 0.499±0.00 N/A 0.797±0.00 0.679±0.00 0.436±0.00 0.993±0.00 1.665±0.00 0.984±0.00 0.348±0.00 1.453±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YU CIL_0000YU_0001 CGP 2:182833275-183038858
CIL_0000Q8 CIL_0000Q8_0001 CGP 2:182909115-183100005

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001756 IEA somitogenesis
GO:0001843 IEA neural tube closure
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006915 TAS apoptotic process
GO:0007354 IEA zygotic determination of anterior/posterior axis, embryo
GO:0007417 TAS central nervous system development
GO:0007492 IEA endoderm development
GO:0008078 IEA mesodermal cell migration
GO:0010172 IEA embryonic body morphogenesis
GO:0010592 IMP positive regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0016601 IDA Rac protein signal transduction
GO:0030027 IEA lamellipodium
GO:0030032 IEA lamellipodium assembly
GO:0030903 IEA notochord development
GO:0030950 IEA establishment or maintenance of actin cytoskeleton polarity
GO:0031209 IDA SCAR complex
GO:0032403 IDA protein complex binding
GO:0032880 IEA regulation of protein localization
GO:0035050 IEA embryonic heart tube development
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0042074 IEA cell migration involved in gastrulation
GO:0045087 TAS innate immune response
GO:0045175 IEA basal protein localization
GO:0045176 IEA apical protein localization
GO:0048339 IEA paraxial mesoderm development
GO:0048340 IEA paraxial mesoderm morphogenesis
GO:0048365 IDA Rac GTPase binding
GO:0048570 IEA notochord morphogenesis
GO:0048617 IEA embryonic foregut morphogenesis
GO:0050821 IEA protein stabilization
GO:0070062 IDA extracellular vesicular exosome
GO:2000601 IDA positive regulation of Arp2/3 complex-mediated actin nucleation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060853 nckap1 NCK-associated protein 1 protein_coding Danio_rerio
ENSMUSG00000027002 Nckap1 NCK-associated protein 1 protein_coding Mus_musculus

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