C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000Q8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000061676-ENSG00000162999 CGP 9606 2:182909115-183100005
GeneTranscriptPositionBiotype
ENSG00000061676 (NCKAP1)
NCK-associated protein 1 		ENST00000360982 (NCKAP1-002) 182924877-183038858 protein_coding
ENST00000361354 (NCKAP1-001) 182909115-183038472 protein_coding
ENST00000471640 (NCKAP1-005) 182930725-182942119 processed_transcript
ENST00000477988 (NCKAP1-003) 182925657-182927265 retained_intron
ENST00000478449 (NCKAP1-006) 182928119-182947162 processed_transcript
ENST00000492058 (NCKAP1-004) 182934402-182935503 retained_intron
ENST00000493359 (NCKAP1-007) 182953300-182957044 retained_intron
ENST00000495619 (NCKAP1-008) 182957141-182964764 retained_intron
ENSG00000202141 (Y_RNA)
Y RNA 		ENST00000365271 (Y_RNA.1-534) 183022859-183022971 misc_RNA
ENSG00000231203 (KRT8P10)
keratin 8 pseudogene 10 		ENST00000450021 (KRT8P10-001) 183071040-183072486 processed_pseudogene
CIL_0000Q8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027002-ENSMUSG00000027001 CGP 10090 2:80500512-80632361
GeneTranscriptPositionBiotype
ENSMUSG00000026999 (Nup35)
nucleoporin 35 		ENSMUST00000028382 (Nup35-001) 80638816-80658902 protein_coding
ENSMUST00000124377 (Nup35-002) 80638832-80656004 protein_coding
ENSMUST00000127926 (Nup35-004) 80644204-80653414 processed_transcript
ENSMUST00000135305 (Nup35-005) 80617236-80658906 processed_transcript
ENSMUST00000144697 (Nup35-003) 80639264-80646464 processed_transcript
ENSMUSG00000027001 (Dusp19)
dual specificity phosphatase 19 		ENSMUST00000028384 (Dusp19-001) 80617045-80631661 protein_coding
ENSMUST00000125033 (Dusp19-007) 80617231-80624272 processed_transcript
ENSMUST00000147290 (Dusp19-003) 80617100-80631730 processed_transcript
ENSMUST00000148084 (Dusp19-006) 80617226-80630824 processed_transcript
ENSMUST00000151204 (Dusp19-004) 80617266-80632361 processed_transcript
ENSMUSG00000027002 (Nckap1)
NCK-associated protein 1 		ENSMUST00000028386 (Nckap1-001) 80500512-80581264 protein_coding
ENSMUST00000111760 (Nckap1-002) 80500518-80581380 protein_coding
ENSMUST00000131872 (Nckap1-004) 80545113-80555070 processed_transcript
ENSMUST00000134587 (Nckap1-005) 80548933-80554790 processed_transcript
ENSMUST00000154793 (Nckap1-003) 80506891-80525680 processed_transcript
ENSMUSG00000081487 (Gm13689)
predicted gene 13689 		ENSMUST00000119360 (Gm13689-001) 80549712-80550396 processed_pseudogene
ENSMUSG00000083284 (Gm13688)
predicted gene 13688 		ENSMUST00000121557 (Gm13688-001) 80602733-80603340 processed_pseudogene
ENSMUSG00000086436 (Gm13690)
predicted gene 13690 		ENSMUST00000118989 (Gm13690-001) 80629284-80629568 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000Q8_0001ENSG00000061676ENST00000360982ENST00000361354ENST00000471640ENST00000477988ENST00000478449ENST00000492058ENST00000493359ENST00000495619ENSG00000202141ENST00000365271ENSG00000231203ENST00000450021CIL_0000Q8_0002ENSMUSG00000026999ENSMUST00000028382ENSMUST00000124377ENSMUST00000127926ENSMUST00000135305ENSMUST00000144697ENSMUSG00000027001ENSMUST00000028384ENSMUST00000125033ENSMUST00000147290ENSMUST00000148084ENSMUST00000151204ENSMUSG00000027002ENSMUST00000028386ENSMUST00000111760ENSMUST00000131872ENSMUST00000134587ENSMUST00000154793ENSMUSG00000081487ENSMUST00000119360ENSMUSG00000083284ENSMUST00000121557ENSMUSG00000086436ENSMUST00000118989
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000Q8_0001ENSG00000061676ENST00000360982ENST00000361354ENSG00000202141ENST00000365271ENSG00000231203ENST00000450021CIL_0000Q8_0002ENSMUSG00000026999ENSMUST00000028382ENSMUST00000124377ENSMUST00000144697ENSMUSG00000027001ENSMUST00000028384ENSMUST00000147290ENSMUST00000151204ENSMUSG00000027002ENSMUST00000028386ENSMUST00000111760ENSMUST00000134587ENSMUST00000154793ENSMUSG00000081487ENSMUST00000119360ENSMUSG00000083284ENSMUST00000121557ENSMUSG00000086436ENSMUST00000118989
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000061676 ENST00000360982 30.154±0.00 23.034±0.00 8.616±0.00 41.475±9.27 19.520±8.23 31.050±18.55 23.531±18.01 22.195±14.57 15.596±6.63 21.004±4.76 22.666±17.40 25.854±2.15 14.855±2.49 24.261±9.42
ENST00000361354 N/A N/A 0.499±0.00 N/A 0.797±0.00 0.679±0.00 0.436±0.00 0.993±0.00 1.665±0.00 0.984±0.00 0.348±0.00 1.453±0.00 N/A N/A
ENST00000471640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202141 ENST00000365271 0.176±0.00 N/A N/A N/A N/A N/A 0.612±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000231203 ENST00000450021 0.013±0.00 N/A 0.098±0.00 N/A N/A N/A N/A 0.016±0.00 N/A 0.015±0.00 N/A 0.043±0.00 0.039±0.00 0.042±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026999 ENSMUST00000028382 6.123±0.91 3.312±0.49 6.239±1.68 10.372±6.81 5.415±2.94 2.514±0.56 2.328±0.18 5.075±0.40 8.676±8.17 4.599±1.07 3.190±0.53 5.818±1.70 7.525±5.37 18.611±9.75
ENSMUST00000124377 4.745±0.00 15.992±5.75 N/A 12.024±0.00 3.663±0.22 4.562±1.13 N/A 4.483±0.04 6.619±5.95 3.616±0.08 N/A 10.682±2.12 4.657±0.00 N/A
ENSMUST00000127926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.863±0.00
ENSMUSG00000027001 ENSMUST00000028384 4.841±0.75 4.082±0.91 2.758±0.45 5.372±0.23 3.150±0.76 2.153±0.57 2.448±0.45 3.305±0.64 2.773±0.94 3.600±0.87 1.417±0.19 3.515±0.74 3.268±1.10 0.403±0.00
ENSMUST00000125033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147290 N/A N/A 1.524±0.00 N/A N/A 2.275±0.00 N/A N/A N/A 2.062±0.34 N/A 4.536±0.54 N/A N/A
ENSMUST00000148084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151204 1.798±0.00 N/A 1.167±0.00 1.189±0.00 N/A N/A N/A N/A N/A N/A N/A 1.504±0.02 0.401±0.00 N/A
ENSMUSG00000027002 ENSMUST00000028386 32.597±1.62 35.459±3.71 40.775±3.54 31.674±4.11 22.528±3.26 29.523±1.65 13.729±0.61 29.322±1.00 13.908±4.54 28.598±1.06 10.022±0.54 34.381±7.93 35.107±9.46 6.918±2.78
ENSMUST00000111760 N/A N/A N/A 16.138±1.88 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134587 N/A N/A N/A 162.111±0.00 N/A N/A N/A N/A N/A N/A N/A 68.004±0.00 86.701±13.47 7.437±0.00
ENSMUST00000154793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.807±0.00
ENSMUSG00000081487 ENSMUST00000119360 0.195±0.05 0.238±0.09 0.193±0.07 0.419±0.14 0.134±0.05 0.276±0.23 0.137±0.06 0.163±0.07 0.102±0.07 0.325±0.10 0.097±0.04 0.438±0.22 0.232±0.10 0.106±0.06
ENSMUSG00000083284 ENSMUST00000121557 0.289±0.12 0.552±0.56 0.261±0.09 0.322±0.03 0.378±0.27 N/A 0.078±0.00 0.201±0.11 0.051±0.03 0.201±0.05 0.094±0.02 0.149±0.04 0.200±0.10 0.177±0.13
ENSMUSG00000086436 ENSMUST00000118989 1.248±0.64 1.469±0.67 1.116±0.31 1.513±0.10 1.665±0.70 1.807±0.33 0.851±0.45 0.473±0.25 0.558±0.25 1.352±0.53 0.546±0.17 1.591±0.73 0.555±0.18 0.959±0.30

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