C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox D8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027102 Hoxd8 10090 + 2:74704615-74707933 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019749 Hoxd8-001 74704905-74707933 protein_coding
  ENSMUST00000074721 Hoxd8-002 74705152-74707307 protein_coding
  ENSMUST00000151380 Hoxd8-003 74704615-74706812 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019749ENSMUST00000074721ENSMUST00000151380
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019749 11.876±4.32 11.254±2.56 9.910±0.73 0.369±0.00 3.611±1.33 1.718±1.05 0.111±0.00 18.730±6.42 0.028±0.01 0.222±0.00 7.149±3.20 12.048±4.35 0.923±0.60 13.437±0.69
ENSMUST00000074721 1.736±0.60 9.791±6.83 2.441±0.23 0.021±0.00 1.056±0.00 1.791±0.50 0.093±0.00 N/A 0.020±0.00 N/A 3.928±1.21 5.266±2.69 0.545±0.19 3.054±0.50
ENSMUST00000151380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.811±0.00 1.381±0.66 11.715±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017L CIL_00017L_0002 CGP 2:74697727-74707933
CIL_00017M CIL_00017M_0002 CGP 2:74704615-74748442

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003674 ND molecular_function
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048705 IGI skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000175879 HOXD8 homeobox D8 protein_coding Homo_sapiens

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