C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00017L_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128709-ENSG00000175879 CGP 9606 2:176122720-176132695
GeneTranscriptPositionBiotype
ENSG00000128709 (HOXD9)
homeobox D9 		ENST00000249499 (HOXD9-001) 176122720-176124937 protein_coding
ENST00000613849 (HOXD9-201) 176122763-176124244 protein_coding
ENSG00000175879 (HOXD8)
homeobox D8 		ENST00000313173 (HOXD8-001) 176129740-176132029 protein_coding
ENST00000429017 (HOXD8-002) 176129694-176132695 protein_coding
ENST00000450510 (HOXD8-003) 176130357-176132000 protein_coding
ENST00000544999 (HOXD8-004) 176130022-176132100 protein_coding

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_00017L_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000043342-ENSMUSG00000027102 CGP 10090 2:74697727-74707933
GeneTranscriptPositionBiotype
ENSMUSG00000027102 (Hoxd8)
homeobox D8 		ENSMUST00000019749 (Hoxd8-001) 74704905-74707933 protein_coding
ENSMUST00000074721 (Hoxd8-002) 74705152-74707307 protein_coding
ENSMUST00000151380 (Hoxd8-003) 74704615-74706812 protein_coding
ENSMUSG00000043342 (Hoxd9)
homeobox D9 		ENSMUST00000059272 (Hoxd9-001) 74697727-74700208 protein_coding
ENSMUSG00000052371 (Hoxd3os1)
homeobox D3, opposite strand 1 		ENSMUST00000132326 (Hoxd3os1-004) 74703248-74712054 antisense
ENSMUST00000139005 (Hoxd3os1-002) 74713126-74716130 antisense
ENSMUST00000145799 (Hoxd3os1-001) 74710193-74715996 antisense
ENSMUST00000156342 (Hoxd3os1-003) 74710043-74712526 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00017L_0001ENSG00000128709ENST00000249499ENST00000613849ENSG00000175879ENST00000313173ENST00000429017ENST00000450510ENST00000544999CIL_00017L_0002ENSMUSG00000027102ENSMUST00000019749ENSMUST00000074721ENSMUST00000151380ENSMUSG00000043342ENSMUST00000059272ENSMUSG00000052371ENSMUST00000132326ENSMUST00000139005ENSMUST00000145799ENSMUST00000156342
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00017L_0001ENSG00000128709ENST00000249499ENST00000613849ENSG00000175879ENST00000313173ENST00000429017ENST00000450510ENST00000544999CIL_00017L_0002ENSMUSG00000027102ENSMUST00000019749ENSMUST00000074721ENSMUST00000151380ENSMUSG00000043342ENSMUST00000059272ENSMUSG00000052371ENSMUST00000132326ENSMUST00000139005ENSMUST00000145799ENSMUST00000156342
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128709 ENST00000249499 8.720±0.00 8.508±0.00 1.871±0.00 N/A 5.134±4.78 7.380±0.00 0.078±0.06 19.216±0.00 0.102±0.07 0.423±0.00 0.401±0.16 8.951±4.00 1.150±0.31 12.395±3.02
ENST00000613849 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 N/A 1.593±1.44 2.502±0.00 8.694±0.00
ENSG00000175879 ENST00000313173 N/A N/A N/A N/A 1.521±0.00 3.832±0.00 0.350±0.00 25.438±0.00 N/A 0.455±0.00 0.528±0.00 3.731±1.26 0.120±0.00 N/A
ENST00000429017 4.822±0.00 1.438±0.00 4.061±0.00 N/A 4.149±1.91 1.296±0.12 0.141±0.00 23.980±0.00 0.440±0.43 0.186±0.00 0.689±0.13 3.414±2.77 0.319±0.06 7.197±3.35
ENST00000450510 6.630±0.00 3.579±0.00 2.572±0.00 0.014±0.00 2.154±0.40 4.501±0.00 N/A N/A N/A 0.367±0.00 0.859±0.00 4.128±3.90 0.338±0.24 6.931±3.32
ENST00000544999 N/A N/A N/A N/A N/A 1.337±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027102 ENSMUST00000019749 11.876±4.32 11.254±2.56 9.910±0.73 0.369±0.00 3.611±1.33 1.718±1.05 0.111±0.00 18.730±6.42 0.028±0.01 0.222±0.00 7.149±3.20 12.048±4.35 0.923±0.60 13.437±0.69
ENSMUST00000074721 1.736±0.60 9.791±6.83 2.441±0.23 0.021±0.00 1.056±0.00 1.791±0.50 0.093±0.00 N/A 0.020±0.00 N/A 3.928±1.21 5.266±2.69 0.545±0.19 3.054±0.50
ENSMUST00000151380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.811±0.00 1.381±0.66 11.715±0.00
ENSMUSG00000043342 ENSMUST00000059272 15.533±11.58 2.288±1.22 5.904±0.42 0.078±0.05 2.757±0.56 0.916±0.37 0.064±0.02 11.192±3.77 0.012±0.01 0.220±0.07 9.038±1.15 12.575±6.87 1.799±0.89 0.824±0.27
ENSMUSG00000052371 ENSMUST00000132326 N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.04 N/A 3.162±1.20 N/A N/A N/A
ENSMUST00000139005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.933±14.70
ENSMUST00000145799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.780±4.06
ENSMUST00000156342 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.266±0.00 1.705±0.33 N/A N/A N/A

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