C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox D8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019749 Hoxd8-001 ENSMUSG00000027102 10090 + 2:74704905-74707933 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019749
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019749 11.876±4.32 11.254±2.56 9.910±0.73 0.369±0.00 3.611±1.33 1.718±1.05 0.111±0.00 18.730±6.42 0.028±0.01 0.222±0.00 7.149±3.20 12.048±4.35 0.923±0.60 13.437±0.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017L CIL_00017L_0002 CGP 2:74697727-74707933
CIL_00017M CIL_00017M_0002 CGP 2:74704615-74748442

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003674 ND molecular_function
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048705 IGI skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082355 hoxd4a-001 protein_coding Danio_rerio 0.00000000001 77
ENST00000313173 HOXD8-001 protein_coding Homo_sapiens 0 1626
ENST00000429017 HOXD8-002 protein_coding Homo_sapiens 0 1107
ENST00000450510 HOXD8-003 protein_coding Homo_sapiens 0 1395
ENST00000544999 HOXD8-004 protein_coding Homo_sapiens 0 1059

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