C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 12, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027202 Slc12a1 10090 + 2:125152505-125230002 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028630 Slc12a1-002 125152600-125230002 protein_coding
  ENSMUST00000110494 Slc12a1-001 125152505-125230002 protein_coding
  ENSMUST00000110495 Slc12a1-003 125152600-125229999 protein_coding
  ENSMUST00000147095 Slc12a1-004 125152580-125167145 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028630ENSMUST00000110494ENSMUST00000110495ENSMUST00000147095
Transcript ID Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028630 0.024±0.02 0.003±0.00 0.001±0.00 18.751±4.41 0.001±0.00 0.017±0.00 N/A 0.023±0.01 0.014±0.01 0.147±0.09
ENSMUST00000110494 N/A 0.039±0.00 N/A 17.393±3.16 N/A N/A N/A N/A N/A N/A
ENSMUST00000110495 0.010±0.00 0.007±0.00 0.006±0.00 79.625±11.42 0.001±0.00 0.021±0.01 N/A 0.007±0.00 0.030±0.02 0.086±0.03
ENSMUST00000147095 N/A N/A N/A N/A N/A 0.035±0.00 0.020±0.00 N/A 0.020±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NH CIL_0004NH_0002 CGP 2:125136692-125230002
CIL_0004QD CIL_0004QD_0003 CGP 2:125152505-125258608

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001822 IMP kidney development
GO:0005515 IPI protein binding
GO:0007588 IMP excretion
GO:0015377 IEA cation:chloride symporter activity
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0048878 IMP chemical homeostasis
GO:0070062 IEA extracellular vesicular exosome
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059390 slc12a1 solute carrier family 12, member 1 protein_coding Danio_rerio
ENSG00000074803 SLC12A1 solute carrier family 12 (sodium/potassium/chloride transporter), member 1 protein_coding Homo_sapiens

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