C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 12 (sodium/potassium/chloride transporter), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000074803 SLC12A1 9606 + 15:48191664-48304078 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330289 SLC12A1-002 48207534-48237349 protein_coding
  ENST00000380993 SLC12A1-201 48206301-48304076 protein_coding
  ENST00000396577 SLC12A1-001 48206302-48304078 protein_coding
  ENST00000558252 SLC12A1-007 48222328-48304076 retained_intron
  ENST00000558405 SLC12A1-006 48207706-48302997 protein_coding
  ENST00000558805 SLC12A1-012 48232725-48235344 protein_coding
  ENST00000559641 SLC12A1-005 48191765-48285127 protein_coding
  ENST00000559723 SLC12A1-010 48225851-48234925 processed_transcript
  ENST00000560692 SLC12A1-008 48224326-48304078 retained_intron
  ENST00000561031 SLC12A1-011 48207720-48221445 protein_coding
  ENST00000561127 SLC12A1-009 48191664-48230430 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000330289ENST00000380993ENST00000396577ENST00000558252ENST00000558405ENST00000558805ENST00000560692ENST00000561031ENST00000561127
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000330289 N/A N/A N/A N/A N/A N/A N/A 0.124±0.00 N/A N/A 0.025±0.00 N/A N/A
ENST00000380993 0.002±0.00 N/A N/A 0.110±0.00 N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A 0.198±0.00
ENST00000396577 N/A N/A N/A N/A N/A N/A N/A 109.060±0.00 0.010±0.00 N/A N/A N/A N/A
ENST00000558252 N/A 0.002±0.00 40.152±0.00 N/A N/A 0.018±0.00 0.002±0.00 N/A N/A 0.010±0.00 N/A N/A N/A
ENST00000558405 N/A N/A N/A 0.427±0.00 0.028±0.00 N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A
ENST00000558805 N/A N/A N/A N/A N/A 0.328±0.00 N/A N/A N/A N/A 0.065±0.00 N/A N/A
ENST00000560692 N/A N/A N/A 0.091±0.00 N/A N/A 0.009±0.00 N/A N/A 0.011±0.00 0.015±0.01 0.003±0.00 N/A
ENST00000561031 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A N/A N/A
ENST00000561127 N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NI CIL_0004NI_0001 CGP 15:48134631-48203756
CIL_0004NH CIL_0004NH_0001 CGP 15:48191539-48304078
CIL_0004QD CIL_0004QD_0002 CGP 15:48191664-48343373

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001822 IEA kidney development
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006813 IEA potassium ion transport
GO:0006814 IEA sodium ion transport
GO:0006821 TAS chloride transport
GO:0007588 IEA excretion
GO:0008219 IEA cell death
GO:0008511 TAS sodium:potassium:chloride symporter activity
GO:0015377 IEA cation:chloride symporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016324 IEA apical plasma membrane
GO:0034220 ISS ion transmembrane transport
GO:0048878 IEA chemical homeostasis
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059390 slc12a1 solute carrier family 12, member 1 protein_coding Danio_rerio
ENSMUSG00000027202 Slc12a1 solute carrier family 12, member 1 protein_coding Mus_musculus

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