C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 12, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110495 Slc12a1-003 ENSMUSG00000027202 10090 + 2:125152600-125229999 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000110495
Transcript ID Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000110495 0.010±0.00 0.007±0.00 0.006±0.00 79.625±11.42 0.001±0.00 0.021±0.01 0.007±0.00 0.030±0.02 0.086±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NH CIL_0004NH_0002 CGP 2:125136692-125230002
CIL_0004QD CIL_0004QD_0003 CGP 2:125152505-125258608

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001822 IMP kidney development
GO:0005515 IPI protein binding
GO:0007588 IMP excretion
GO:0015377 IEA cation:chloride symporter activity
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0048878 IMP chemical homeostasis
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330289 SLC12A1-002 protein_coding Homo_sapiens 0 1162
ENST00000380993 SLC12A1-201 protein_coding Homo_sapiens 0 3799
ENST00000396577 SLC12A1-001 protein_coding Homo_sapiens 0 3943
ENST00000558252 SLC12A1-007 retained_intron Homo_sapiens 0 3398
ENST00000558405 SLC12A1-006 protein_coding Homo_sapiens 0 3786
ENST00000558805 SLC12A1-012 protein_coding Homo_sapiens 0 339
ENST00000559641 SLC12A1-005 protein_coding Homo_sapiens 0 2547
ENST00000559723 SLC12A1-010 processed_transcript Homo_sapiens 0 569
ENST00000560692 SLC12A1-008 retained_intron Homo_sapiens 0 3301
ENST00000561031 SLC12A1-011 protein_coding Homo_sapiens 0 547
ENST00000561127 SLC12A1-009 protein_coding Homo_sapiens 0 412

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