C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004QD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000059390-ENSDARG00000086768 CGP 7955 18:4695727-4735630
GeneTranscriptPositionBiotype
ENSDARG00000059390 (slc12a1)
solute carrier family 12, member 1 		ENSDART00000027839 (slc12a1-001) 4695727-4722640 protein_coding
ENSDART00000133597 (slc12a1-002) 4725739-4727527 protein_coding
ENSDARG00000086768 (dut)
dUTP pyrophosphatase 		ENSDART00000122000 (dut-001) 4729279-4735630 protein_coding
ENSDART00000131941 (dut-005) 4731547-4735579 protein_coding
ENSDART00000132694 (dut-004) 4730699-4732922 protein_coding
ENSDART00000133436 (dut-003) 4730628-4735624 protein_coding
ENSDART00000145723 (dut-002) 4729030-4735626 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0004QD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000074803-ENSG00000128951 CGP 9606 15:48191664-48343373
GeneTranscriptPositionBiotype
ENSG00000074803 (SLC12A1)
solute carrier family 12 (sodium/potassium/chloride transporter), member 1 		ENST00000330289 (SLC12A1-002) 48207534-48237349 protein_coding
ENST00000380993 (SLC12A1-201) 48206301-48304076 protein_coding
ENST00000396577 (SLC12A1-001) 48206302-48304078 protein_coding
ENST00000558252 (SLC12A1-007) 48222328-48304076 retained_intron
ENST00000558405 (SLC12A1-006) 48207706-48302997 protein_coding
ENST00000558805 (SLC12A1-012) 48232725-48235344 protein_coding
ENST00000559641 (SLC12A1-005) 48191765-48285127 protein_coding
ENST00000559723 (SLC12A1-010) 48225851-48234925 processed_transcript
ENST00000560692 (SLC12A1-008) 48224326-48304078 retained_intron
ENST00000561031 (SLC12A1-011) 48207720-48221445 protein_coding
ENST00000561127 (SLC12A1-009) 48191664-48230430 protein_coding
ENSG00000128951 (DUT)
deoxyuridine triphosphatase 		ENST00000331200 (DUT-001) 48331423-48343373 protein_coding
ENST00000455976 (DUT-003) 48332103-48343369 protein_coding
ENST00000558367 (DUT-010) 48332406-48342033 protein_coding
ENST00000558472 (DUT-009) 48331456-48342052 protein_coding
ENST00000558813 (DUT-006) 48331405-48342293 protein_coding
ENST00000558978 (DUT-002) 48331473-48342395 nonsense_mediated_decay
ENST00000559416 (DUT-008) 48331095-48342137 protein_coding
ENST00000559540 (DUT-004) 48332210-48342395 protein_coding
ENST00000559852 (DUT-011) 48341136-48342062 retained_intron
ENST00000559935 (DUT-007) 48331011-48341495 protein_coding
ENST00000561350 (DUT-012) 48334445-48340236 processed_transcript
ENSG00000202542 (Y_RNA)
Y RNA 		ENST00000365672 (Y_RNA.1-584) 48325558-48325671 misc_RNA
ENSG00000233932 (CTXN2)
cortexin 2 		ENST00000417307 (CTXN2-001) 48191539-48203756 protein_coding
ENSG00000259385 (RP11-605F22.1)
 ENST00000559875 (RP11-605F22.1-001) 48192191-48201684 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0004QD_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027202-ENSMUSG00000027203 CGP 10090 2:125152505-125258608
GeneTranscriptPositionBiotype
ENSMUSG00000027202 (Slc12a1)
solute carrier family 12, member 1 		ENSMUST00000028630 (Slc12a1-002) 125152600-125230002 protein_coding
ENSMUST00000110494 (Slc12a1-001) 125152505-125230002 protein_coding
ENSMUST00000110495 (Slc12a1-003) 125152600-125229999 protein_coding
ENSMUST00000147095 (Slc12a1-004) 125152580-125167145 retained_intron
ENSMUSG00000027203 (Dut)
deoxyuridine triphosphatase 		ENSMUST00000051605 (Dut-002) 125247482-125258608 protein_coding
ENSMUST00000082122 (Dut-001) 125247190-125257748 protein_coding
ENSMUST00000133211 (Dut-003) 125247900-125249028 processed_transcript
ENSMUSG00000086416 (Gm14002)
predicted gene 14002 		ENSMUST00000123574 (Gm14002-001) 125207529-125217512 antisense

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004QD_0001ENSDARG00000059390ENSDART00000027839ENSDART00000133597ENSDARG00000086768ENSDART00000122000ENSDART00000131941ENSDART00000132694ENSDART00000133436ENSDART00000145723CIL_0004QD_0002ENSG00000074803ENST00000330289ENST00000380993ENST00000396577ENST00000558252ENST00000558405ENST00000558805ENST00000559641ENST00000559723ENST00000560692ENST00000561031ENST00000561127ENSG00000128951ENST00000331200ENST00000455976ENST00000558367ENST00000558472ENST00000558813ENST00000558978ENST00000559416ENST00000559540ENST00000559852ENST00000559935ENST00000561350ENSG00000202542ENST00000365672ENSG00000233932ENST00000417307ENSG00000259385ENST00000559875CIL_0004QD_0003ENSMUSG00000027202ENSMUST00000028630ENSMUST00000110494ENSMUST00000110495ENSMUST00000147095ENSMUSG00000027203ENSMUST00000051605ENSMUST00000082122ENSMUST00000133211ENSMUSG00000086416ENSMUST00000123574
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004QD_0001ENSDARG00000059390ENSDART00000027839ENSDART00000133597ENSDARG00000086768ENSDART00000122000ENSDART00000131941ENSDART00000132694ENSDART00000133436ENSDART00000145723CIL_0004QD_0002ENSG00000074803ENST00000330289ENST00000380993ENST00000396577ENST00000558252ENST00000558405ENST00000558805ENST00000560692ENST00000561031ENST00000561127ENSG00000128951ENST00000331200ENST00000455976ENST00000558472ENST00000558813ENST00000558978ENST00000559416ENSG00000202542ENST00000365672ENSG00000233932ENST00000417307ENSG00000259385ENST00000559875CIL_0004QD_0003ENSMUSG00000027202ENSMUST00000028630ENSMUST00000110494ENSMUST00000110495ENSMUST00000147095ENSMUSG00000027203ENSMUST00000051605ENSMUST00000082122ENSMUST00000133211ENSMUSG00000086416ENSMUST00000123574
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000059390 ENSDART00000027839 N/A N/A N/A N/A N/A N/A N/A 11.005±9.81 0.078±0.00 N/A 3.327±0.00 N/A N/A N/A
ENSDART00000133597 N/A N/A N/A 0.267±0.01 N/A N/A N/A 96.009±2.23 0.185±0.00 N/A 3.118±0.00 N/A N/A N/A
ENSDARG00000086768 ENSDART00000122000 N/A N/A N/A 4.066±2.71 N/A N/A 6.844±3.67 19.733±0.00 0.504±0.00 N/A 8.016±0.00 N/A N/A N/A
ENSDART00000131941 N/A N/A N/A 0.263±0.04 N/A N/A N/A 0.889±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000132694 N/A N/A N/A N/A N/A N/A N/A N/A 0.292±0.00 N/A N/A N/A N/A N/A
ENSDART00000133436 N/A N/A N/A 4.500±2.57 N/A N/A 3.306±0.00 N/A 0.520±0.00 N/A 2.516±0.00 N/A N/A N/A
ENSDART00000145723 N/A N/A N/A 3.530±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000074803 ENST00000330289 N/A N/A N/A N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A 0.025±0.00 N/A N/A
ENST00000380993 0.002±0.00 N/A N/A 0.110±0.00 N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.198±0.00
ENST00000396577 N/A N/A N/A N/A N/A N/A N/A 109.060±0.00 0.010±0.00 N/A N/A N/A N/A N/A
ENST00000558252 N/A 0.002±0.00 40.152±0.00 N/A N/A 0.018±0.00 0.002±0.00 N/A N/A N/A 0.010±0.00 N/A N/A N/A
ENST00000558405 N/A N/A N/A 0.427±0.00 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A
ENST00000558805 N/A N/A N/A N/A N/A 0.328±0.00 N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A
ENST00000559641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560692 N/A N/A N/A 0.091±0.00 N/A N/A 0.009±0.00 N/A N/A N/A 0.011±0.00 0.015±0.01 0.003±0.00 N/A
ENST00000561031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A N/A N/A
ENST00000561127 N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000128951 ENST00000331200 N/A N/A N/A N/A 1.896±0.00 N/A 1.300±0.69 1.571±0.77 0.907±0.41 1.644±0.49 0.411±0.00 3.542±1.02 2.852±1.46 N/A
ENST00000455976 N/A 2.686±0.00 0.541±0.00 2.465±0.79 1.352±0.29 2.435±0.00 N/A N/A 0.444±0.00 0.847±0.00 0.172±0.00 1.971±0.00 1.168±0.00 2.862±0.00
ENST00000558367 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558472 10.583±0.00 N/A N/A N/A N/A N/A 8.546±0.00 N/A 5.324±0.00 13.757±0.00 1.817±0.83 98.512±80.14 58.548±60.45 134.384±0.00
ENST00000558813 8.903±0.00 11.247±0.00 N/A 7.943±0.00 9.730±0.00 9.099±0.00 N/A 7.018±0.00 N/A 6.683±0.00 1.984±0.00 27.045±1.18 18.369±4.35 15.435±0.00
ENST00000558978 9.626±0.00 10.151±0.00 2.558±0.00 6.729±0.00 11.003±0.00 11.070±0.00 5.996±0.00 9.683±0.00 2.395±0.00 4.504±0.00 2.138±0.00 N/A 2.836±0.00 9.007±0.00
ENST00000559416 N/A N/A 5.195±0.00 9.900±1.37 11.335±0.00 19.685±0.00 12.458±5.98 5.463±0.00 9.410±5.52 12.463±4.07 2.942±1.96 18.225±0.00 N/A 10.012±0.00
ENST00000559540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202542 ENST00000365672 N/A N/A N/A N/A N/A 9.378±0.00 0.329±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000233932 ENST00000417307 N/A N/A N/A 0.548±0.08 N/A 0.063±0.00 N/A 0.212±0.00 N/A N/A N/A 0.007±0.00 N/A N/A
ENSG00000259385 ENST00000559875 0.021±0.00 N/A N/A 3.516±0.52 0.532±0.00 0.303±0.14 N/A N/A N/A N/A N/A 0.144±0.05 N/A 3.376±1.73
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027202 ENSMUST00000028630 N/A N/A N/A 0.024±0.02 0.003±0.00 N/A 0.001±0.00 18.751±4.41 0.001±0.00 0.017±0.00 N/A 0.023±0.01 0.014±0.01 0.147±0.09
ENSMUST00000110494 N/A N/A N/A N/A 0.039±0.00 N/A N/A 17.393±3.16 N/A N/A N/A N/A N/A N/A
ENSMUST00000110495 N/A N/A N/A 0.010±0.00 0.007±0.00 N/A 0.006±0.00 79.625±11.42 0.001±0.00 0.021±0.01 N/A 0.007±0.00 0.030±0.02 0.086±0.03
ENSMUST00000147095 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 0.020±0.00 N/A 0.020±0.00 N/A
ENSMUSG00000027203 ENSMUST00000051605 1.836±0.93 5.085±0.36 0.999±0.15 3.404±1.10 1.468±0.92 3.107±0.33 0.915±0.37 2.199±0.48 4.503±5.41 1.412±0.42 0.749±0.18 6.583±1.63 3.186±2.30 5.395±0.20
ENSMUST00000082122 7.650±2.00 35.192±12.41 9.760±2.71 25.835±8.81 13.826±5.22 9.604±3.33 11.234±0.26 10.761±2.64 39.385±39.37 10.506±3.58 4.185±1.06 32.798±12.73 48.735±45.42 26.207±28.27
ENSMUST00000133211 N/A N/A 0.112±0.00 N/A N/A N/A N/A N/A 0.322±0.00 N/A N/A 1.537±0.45 0.461±0.19 3.036±2.34
ENSMUSG00000086416 ENSMUST00000123574 0.040±0.00 N/A 0.003±0.00 0.063±0.02 N/A N/A N/A 0.449±0.05 0.012±0.01 N/A N/A 0.049±0.03 0.030±0.02 0.011±0.00

Loading