C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, gamma complex associated protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027263 Tubgcp4 10090 + 2:121170654-121198770 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039541 Tubgcp4-001 121171215-121198770 protein_coding
  ENSMUST00000110657 Tubgcp4-006 121171268-121194211 protein_coding
  ENSMUST00000110658 Tubgcp4-002 121171168-121198770 protein_coding
  ENSMUST00000126817 Tubgcp4-013 121188102-121192413 retained_intron
  ENSMUST00000130929 Tubgcp4-011 121171246-121175918 processed_transcript
  ENSMUST00000133773 Tubgcp4-009 121171293-121184473 processed_transcript
  ENSMUST00000135555 Tubgcp4-010 121173651-121184476 processed_transcript
  ENSMUST00000138601 Tubgcp4-003 121171209-121198769 retained_intron
  ENSMUST00000143305 Tubgcp4-007 121187359-121197049 retained_intron
  ENSMUST00000143320 Tubgcp4-012 121183613-121184803 retained_intron
  ENSMUST00000144076 Tubgcp4-004 121171240-121198769 retained_intron
  ENSMUST00000144123 Tubgcp4-008 121170654-121184430 processed_transcript
  ENSMUST00000154318 Tubgcp4-014 121191947-121196231 retained_intron
  ENSMUST00000154633 Tubgcp4-005 121171582-121186718 retained_intron
  ENSMUST00000186659 Tubgcp4-201 121171209-121198769 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverMuscleOvaryTestisENSMUST00000110657ENSMUST00000110658ENSMUST00000130929
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Muscle Ovary Testis
ENSMUST00000110657 7.256±0.37 N/A 9.590±0.00 7.810±0.00 7.173±0.00 2.658±0.00 4.009±0.00 13.259±0.00 11.146±0.44
ENSMUST00000110658 N/A N/A N/A 6.305±0.00 N/A N/A N/A N/A N/A
ENSMUST00000130929 N/A 29.461±2.07 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YG CIL_0005YG_0002 CGP 2:121140428-121171125
CIL_0005YH CIL_0005YH_0002 CGP 2:121158273-121198770
CIL_0005YA CIL_0005YA_0002 CGP 2:121170654-121271407

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000922 IEA spindle pole
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005815 IEA microtubule organizing center
GO:0005874 IEA microtubule
GO:0008150 ND biological_process
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005374 tubgcp4 tubulin, gamma complex associated protein 4 protein_coding Danio_rerio
ENSG00000137822 TUBGCP4 tubulin, gamma complex associated protein 4 protein_coding Homo_sapiens

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