C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, gamma complex associated protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110657 Tubgcp4-006 ENSMUSG00000027263 10090 + 2:121171268-121194211 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLiverMuscleOvaryTestisENSMUST00000110657
Transcript ID Adipose Breast Colon Kidney Liver Muscle Ovary Testis
ENSMUST00000110657 7.256±0.37 9.590±0.00 7.810±0.00 7.173±0.00 2.658±0.00 4.009±0.00 13.259±0.00 11.146±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YG CIL_0005YG_0002 CGP 2:121140428-121171125
CIL_0005YH CIL_0005YH_0002 CGP 2:121158273-121198770
CIL_0005YA CIL_0005YA_0002 CGP 2:121170654-121271407

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000922 IEA spindle pole
GO:0003674 ND molecular_function
GO:0005815 IEA microtubule organizing center
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260383 TUBGCP4-001 protein_coding Homo_sapiens 0 2259
ENST00000561691 TUBGCP4-003 nonsense_mediated_decay Homo_sapiens 0 1539
ENST00000562053 TUBGCP4-009 retained_intron Homo_sapiens 0 324
ENST00000563147 TUBGCP4-011 protein_coding Homo_sapiens 0 486
ENST00000563412 TUBGCP4-008 nonsense_mediated_decay Homo_sapiens 0 372
ENST00000563517 TUBGCP4-006 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000563963 TUBGCP4-004 retained_intron Homo_sapiens 0 917
ENST00000564079 TUBGCP4-002 protein_coding Homo_sapiens 0 2272
ENST00000564511 TUBGCP4-007 retained_intron Homo_sapiens 0 438
ENST00000570081 TUBGCP4-005 processed_transcript Homo_sapiens 0 309

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