C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptosomal-associated protein 23
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027287 Snap23 10090 + 2:120567671-120601255 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028743 Snap23-003 120567691-120601255 protein_coding
  ENSMUST00000110711 Snap23-001 120567671-120601255 protein_coding
  ENSMUST00000116437 Snap23-002 120567697-120601255 protein_coding
  ENSMUST00000130759 Snap23-008 120590514-120596787 processed_transcript
  ENSMUST00000137144 Snap23-004 120586241-120595424 retained_intron
  ENSMUST00000142278 Snap23-005 120567738-120596705 protein_coding
  ENSMUST00000147864 Snap23-007 120567723-120584975 retained_intron
  ENSMUST00000150611 Snap23-009 120567721-120596792 nonsense_mediated_decay
  ENSMUST00000153580 Snap23-006 120567723-120586267 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028743ENSMUST00000110711ENSMUST00000116437ENSMUST00000130759ENSMUST00000142278ENSMUST00000147864ENSMUST00000150611ENSMUST00000153580
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028743 N/A 1.720±0.34 N/A 1.581±0.16 1.236±0.00 N/A N/A 1.579±0.00 2.523±0.11 N/A N/A 1.732±0.68 4.585±0.00 N/A
ENSMUST00000110711 7.323±0.82 2.980±0.88 14.007±2.80 3.803±2.35 4.070±2.75 3.826±1.49 2.896±0.15 6.918±1.86 7.664±4.19 6.055±2.08 N/A 4.321±1.35 13.204±5.96 3.186±1.56
ENSMUST00000116437 N/A 2.098±0.07 N/A N/A 3.318±1.32 N/A 4.619±0.38 N/A 2.653±0.00 N/A 5.518±0.70 3.280±2.55 N/A N/A
ENSMUST00000130759 N/A N/A N/A 23.305±0.00 N/A N/A N/A N/A N/A N/A N/A 91.215±0.00 112.771±2.64 40.175±0.00
ENSMUST00000142278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.162±0.00 27.608±3.59 20.309±0.00
ENSMUST00000147864 N/A 1.453±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150611 N/A N/A N/A 10.511±0.00 N/A 4.146±0.30 N/A N/A N/A N/A N/A 17.657±21.27 50.488±20.10 25.431±29.96
ENSMUST00000153580 N/A 2.330±0.08 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PK CIL_0005PK_0002 CGP 2:120506820-120601255
CIL_0005PJ CIL_0005PJ_0002 CGP 2:120567671-120609520

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005886 IDA plasma membrane
GO:0005925 IEA focal adhesion
GO:0006887 IMP exocytosis
GO:0015031 IEA protein transport
GO:0030054 IEA cell junction
GO:0031410 IDA cytoplasmic vesicle
GO:0042581 IEA specific granule
GO:0042582 IEA azurophil granule
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012874 SNAP23 (1 of 2) synaptosomal-associated protein, 23kDa protein_coding Danio_rerio
ENSDARG00000055252 SNAP23 (2 of 2) synaptosomal-associated protein, 23kDa protein_coding Danio_rerio
ENSG00000092531 SNAP23 synaptosomal-associated protein, 23kDa protein_coding Homo_sapiens

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