C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptosomal-associated protein 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028743 Snap23-003 ENSMUSG00000027287 10090 + 2:120567691-120601255 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverOvaryPlacentaENSMUST00000028743
Transcript ID Adrenal Brain Breast Kidney Liver Ovary Placenta
ENSMUST00000028743 1.720±0.34 1.581±0.16 1.236±0.00 1.579±0.00 2.523±0.11 1.732±0.68 4.585±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PK CIL_0005PK_0002 CGP 2:120506820-120601255
CIL_0005PJ CIL_0005PJ_0002 CGP 2:120567671-120609520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0006887 IMP exocytosis
GO:0015031 IEA protein transport
GO:0030054 IEA cell junction
GO:0031410 IDA cytoplasmic vesicle
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249647 SNAP23-001 protein_coding Homo_sapiens 0 795
ENST00000349777 SNAP23-201 protein_coding Homo_sapiens 0 363
ENST00000397138 SNAP23-002 protein_coding Homo_sapiens 0 359
ENST00000433229 SNAP23P-001 processed_pseudogene Homo_sapiens 0 257
ENST00000561526 SNAP23-003 protein_coding Homo_sapiens 0 475
ENST00000563333 SNAP23-016 retained_intron Homo_sapiens 0 440
ENST00000563765 SNAP23-006 nonsense_mediated_decay Homo_sapiens 0 671
ENST00000563830 SNAP23-017 protein_coding Homo_sapiens 0 492
ENST00000563873 SNAP23-019 protein_coding Homo_sapiens 0 217
ENST00000564153 SNAP23-008 protein_coding Homo_sapiens 0 364
ENST00000566035 SNAP23-014 nonsense_mediated_decay Homo_sapiens 0 568
ENST00000566327 SNAP23-009 protein_coding Homo_sapiens 0 625
ENST00000567094 SNAP23-015 protein_coding Homo_sapiens 0 363
ENST00000568331 SNAP23-020 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000568451 SNAP23-005 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000568514 SNAP23-013 retained_intron Homo_sapiens 0 608
ENST00000568745 SNAP23-021 retained_intron Homo_sapiens 0.0000000000002 81
ENST00000568841 SNAP23-018 protein_coding Homo_sapiens 0 488
ENST00000568859 SNAP23-012 protein_coding Homo_sapiens 0 433

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