C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptosomal-associated protein, 23kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092531 SNAP23 9606 + 15:42491233-42545356 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249647 SNAP23-001 42495260-42533061 protein_coding
  ENST00000349777 SNAP23-201 42495306-42533059 protein_coding
  ENST00000397138 SNAP23-002 42511847-42531478 protein_coding
  ENST00000561526 SNAP23-003 42491244-42528370 protein_coding
  ENST00000563333 SNAP23-016 42527943-42531651 retained_intron
  ENST00000563451 SNAP23-011 42495651-42512364 retained_intron
  ENST00000563765 SNAP23-006 42492871-42531545 nonsense_mediated_decay
  ENST00000563830 SNAP23-017 42515237-42545356 protein_coding
  ENST00000563873 SNAP23-019 42513410-42545347 protein_coding
  ENST00000564153 SNAP23-008 42495634-42531827 protein_coding
  ENST00000566035 SNAP23-014 42495678-42529820 nonsense_mediated_decay
  ENST00000566141 SNAP23-010 42495634-42505688 processed_transcript
  ENST00000566327 SNAP23-009 42495644-42529804 protein_coding
  ENST00000567094 SNAP23-015 42495642-42522095 protein_coding
  ENST00000568227 SNAP23-004 42491299-42513125 retained_intron
  ENST00000568331 SNAP23-020 42495644-42528373 nonsense_mediated_decay
  ENST00000568451 SNAP23-005 42492842-42528343 nonsense_mediated_decay
  ENST00000568514 SNAP23-013 42511833-42531444 retained_intron
  ENST00000568745 SNAP23-021 42491233-42513442 retained_intron
  ENST00000568841 SNAP23-018 42515237-42545345 protein_coding
  ENST00000568859 SNAP23-012 42495709-42528323 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000249647ENST00000349777ENST00000397138ENST00000563333ENST00000563765ENST00000563830ENST00000564153ENST00000566327ENST00000568514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000249647 N/A N/A 1.575±0.00 1.507±0.00 4.762±0.00 4.492±0.00 1.645±0.00 2.132±0.00 4.437±0.00 5.058±0.00 0.400±0.00 5.394±2.10 15.599±2.52 5.682±0.97
ENST00000349777 5.176±0.00 8.018±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.301±0.00 30.806±0.00 N/A
ENST00000563333 N/A N/A N/A 3.597±0.00 N/A N/A 2.460±0.00 10.189±0.00 3.933±0.00 N/A 1.107±0.00 6.551±0.00 N/A N/A
ENST00000563765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.466±0.00
ENST00000563830 N/A N/A N/A N/A 16.273±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564153 17.034±0.00 N/A N/A N/A 17.545±0.00 15.086±0.00 11.428±0.00 N/A N/A 19.643±0.00 2.143±0.00 N/A N/A 14.814±0.00
ENST00000566327 25.064±0.00 N/A N/A N/A N/A 23.615±0.00 N/A N/A N/A N/A N/A 18.335±0.00 56.672±0.00 24.556±2.63
ENST00000568514 N/A N/A 4.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 6.567±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PK CIL_0005PK_0001 CGP 15:42412823-42545356
CIL_0005PJ CIL_0005PJ_0001 CGP 15:42491233-42548802

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006887 IEA exocytosis
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0006903 TAS vesicle targeting
GO:0015031 IEA protein transport
GO:0031410 IEA cytoplasmic vesicle
GO:0042581 IDA specific granule
GO:0042582 IDA azurophil granule
GO:0043005 IEA neuron projection
GO:0045202 IEA synapse
GO:0061024 TAS membrane organization
GO:0061025 TAS membrane fusion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012874 SNAP23 (1 of 2) synaptosomal-associated protein, 23kDa protein_coding Danio_rerio
ENSDARG00000055252 SNAP23 (2 of 2) synaptosomal-associated protein, 23kDa protein_coding Danio_rerio
ENSMUSG00000027287 Snap23 synaptosomal-associated protein 23 protein_coding Mus_musculus

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