C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD51 homolog
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027323 Rad51 10090 + 2:119112793-119147445 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028795 Rad51-001 119112807-119137290 protein_coding
  ENSMUST00000110828 Rad51-004 119112814-119133599 retained_intron
  ENSMUST00000140939 Rad51-005 119112793-119123846 protein_coding
  ENSMUST00000141389 Rad51-006 119118696-119122262 retained_intron
  ENSMUST00000143934 Rad51-002 119134162-119135208 retained_intron
  ENSMUST00000151406 Rad51-008 119123803-119147445 protein_coding
  ENSMUST00000152327 Rad51-003 119112817-119137037 nonsense_mediated_decay
  ENSMUST00000154683 Rad51-007 119131518-119134455 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaTestisENSMUST00000028795ENSMUST00000151406ENSMUST00000152327
Transcript ID Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000028795 2.213±0.36 8.592±4.04 0.290±0.06 1.362±0.00 10.815±0.00 1.561±0.06
ENSMUST00000151406 N/A N/A N/A 6.967±1.20 N/A 5.365±1.11
ENSMUST00000152327 N/A N/A 0.330±0.01 1.557±0.33 7.553±2.15 1.191±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IO CIL_0005IO_0003 CGP 2:119112793-119157034

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 ISS nuclear chromosome
GO:0000724 IDA double-strand break repair via homologous recombination
GO:0000793 IDA condensed chromosome
GO:0000794 IDA condensed nuclear chromosome
GO:0000795 TAS synaptonemal complex
GO:0000800 IDA lateral element
GO:0003677 IEA DNA binding
GO:0003684 IEA damaged DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005524 ISO ATP binding
GO:0005634 ISS nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0005739 IEA mitochondrion
GO:0005856 IEA cytoskeleton
GO:0006200 IEA ATP catabolic process
GO:0006268 ISS DNA unwinding involved in DNA replication
GO:0006281 TAS DNA repair
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007126 IDA meiotic nuclear division
GO:0007131 TAS reciprocal meiotic recombination
GO:0008022 IEA protein C-terminus binding
GO:0008094 IEA DNA-dependent ATPase activity
GO:0010569 ISS regulation of double-strand break repair via homologous recombination
GO:0016605 IEA PML body
GO:0042802 IEA identical protein binding
GO:0043142 IEA single-stranded DNA-dependent ATPase activity
GO:0048471 ISS perinuclear region of cytoplasm
GO:0051106 IEA positive regulation of DNA ligation
GO:0051260 IEA protein homooligomerization
GO:0070182 IEA DNA polymerase binding
GO:0071479 ISS cellular response to ionizing radiation
GO:0072757 ISS cellular response to camptothecin

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041411 rad51 RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) protein_coding Danio_rerio
ENSG00000051180 RAD51 RAD51 recombinase protein_coding Homo_sapiens

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