C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028795 Rad51-001 ENSMUSG00000027323 10090 + 2:119112807-119137290 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaTestisENSMUST00000028795
Transcript ID Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000028795 2.213±0.36 8.592±4.04 0.290±0.06 1.362±0.00 10.815±0.00 1.561±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IO CIL_0005IO_0003 CGP 2:119112793-119157034

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 ISS nuclear chromosome
GO:0000724 IDA double-strand break repair via homologous recombination
GO:0000793 IDA condensed chromosome
GO:0000794 IDA condensed nuclear chromosome
GO:0000795 TAS synaptonemal complex
GO:0000800 IDA lateral element
GO:0003684 IEA damaged DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005524 ISO ATP binding
GO:0005634 ISS nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0005739 IEA mitochondrion
GO:0005856 IEA cytoskeleton
GO:0006200 IEA ATP catabolic process
GO:0006268 ISS DNA unwinding involved in DNA replication
GO:0006281 TAS DNA repair
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007126 IDA meiotic nuclear division
GO:0007131 TAS reciprocal meiotic recombination
GO:0008022 IEA protein C-terminus binding
GO:0010569 ISS regulation of double-strand break repair via homologous recombination
GO:0016605 IEA PML body
GO:0042802 IEA identical protein binding
GO:0043142 IEA single-stranded DNA-dependent ATPase activity
GO:0048471 ISS perinuclear region of cytoplasm
GO:0051106 IEA positive regulation of DNA ligation
GO:0051260 IEA protein homooligomerization
GO:0070182 IEA DNA polymerase binding
GO:0071479 ISS cellular response to ionizing radiation
GO:0072757 ISS cellular response to camptothecin

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267868 RAD51-001 protein_coding Homo_sapiens 0 1389
ENST00000382643 RAD51-009 protein_coding Homo_sapiens 0 929
ENST00000423169 RAD51-002 protein_coding Homo_sapiens 0 1057
ENST00000525066 RAD51-004 nonsense_mediated_decay Homo_sapiens 0 671
ENST00000526763 RAD51-006 protein_coding Homo_sapiens 0 316
ENST00000527860 RAD51-007 protein_coding Homo_sapiens 0 708
ENST00000531277 RAD51-010 nonsense_mediated_decay Homo_sapiens 0 593
ENST00000532743 RAD51-008 protein_coding Homo_sapiens 0 929
ENST00000533741 RAD51-013 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000557850 RAD51-003 protein_coding Homo_sapiens 0 684

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