C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152327 Rad51-003 ENSMUSG00000027323 10090 + 2:119112817-119137037 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryPlacentaTestisENSMUST00000152327
Transcript ID Muscle Ovary Placenta Testis
ENSMUST00000152327 0.330±0.01 1.557±0.33 7.553±2.15 1.191±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IO CIL_0005IO_0003 CGP 2:119112793-119157034

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IDA double-strand break repair via homologous recombination
GO:0000793 IDA condensed chromosome
GO:0000794 IDA condensed nuclear chromosome
GO:0000800 IDA lateral element
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005524 ISO ATP binding
GO:0005634 IDA nucleus
GO:0006200 IEA ATP catabolic process
GO:0007126 IDA meiotic nuclear division
GO:0008094 IEA DNA-dependent ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267868 RAD51-001 protein_coding Homo_sapiens 0 887
ENST00000382643 RAD51-009 protein_coding Homo_sapiens 0 427
ENST00000423169 RAD51-002 protein_coding Homo_sapiens 0 887
ENST00000525066 RAD51-004 nonsense_mediated_decay Homo_sapiens 0 601
ENST00000526763 RAD51-006 protein_coding Homo_sapiens 0 316
ENST00000527860 RAD51-007 protein_coding Homo_sapiens 0 708
ENST00000531277 RAD51-010 nonsense_mediated_decay Homo_sapiens 0 425
ENST00000532743 RAD51-008 protein_coding Homo_sapiens 0 427
ENST00000533741 RAD51-013 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000557850 RAD51-003 protein_coding Homo_sapiens 0 339

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