C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spermine oxidase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027333 Smox 10090 + 2:131491496-131525922 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028806 Smox-001 131491764-131525183 protein_coding
  ENSMUST00000110179 Smox-003 131491943-131525172 protein_coding
  ENSMUST00000110180 Smox-009 131491993-131525167 protein_coding
  ENSMUST00000110181 Smox-010 131491964-131525922 protein_coding
  ENSMUST00000110182 Smox-006 131491943-131525172 protein_coding
  ENSMUST00000110183 Smox-007 131491943-131525172 protein_coding
  ENSMUST00000110186 Smox-008 131491943-131525172 protein_coding
  ENSMUST00000110188 Smox-011 131491943-131525172 protein_coding
  ENSMUST00000110189 Smox-005 131491943-131525172 protein_coding
  ENSMUST00000129143 Smox-012 131491496-131520243 protein_coding
  ENSMUST00000131698 Smox-014 131492264-131512177 protein_coding
  ENSMUST00000149180 Smox-015 131508952-131512214 processed_transcript
  ENSMUST00000151143 Smox-017 131521899-131525141 retained_intron
  ENSMUST00000151627 Smox-004 131491943-131525172 retained_intron
  ENSMUST00000183575 Smox-013 131491923-131520282 nonsense_mediated_decay
  ENSMUST00000183881 Smox-016 131520186-131524879 nonsense_mediated_decay
  ENSMUST00000183947 Smox-002 131491943-131525172 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028806ENSMUST00000110179ENSMUST00000110180ENSMUST00000110186ENSMUST00000110188ENSMUST00000110189ENSMUST00000151143ENSMUST00000151627ENSMUST00000183947
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028806 5.369±2.99 4.779±1.28 4.734±1.89 12.449±2.67 3.798±0.65 10.368±1.66 4.899±0.88 2.705±0.33 12.450±12.86 4.198±1.34 124.190±29.61 8.450±3.94 3.460±1.66 3.788±0.99
ENSMUST00000110179 N/A N/A N/A N/A N/A N/A N/A N/A 19.352±9.52 N/A N/A N/A N/A N/A
ENSMUST00000110180 N/A N/A N/A N/A N/A N/A N/A N/A 0.456±0.06 N/A N/A 3.863±0.87 6.068±0.00 N/A
ENSMUST00000110186 3.178±0.75 2.471±0.87 1.976±0.31 8.126±0.00 3.008±0.51 9.004±1.83 2.794±0.83 1.604±0.20 7.618±7.28 4.222±0.36 N/A 6.073±1.23 5.295±3.77 1.076±0.46
ENSMUST00000110188 1.312±0.00 1.256±0.00 N/A N/A N/A N/A N/A N/A 0.403±0.00 N/A 55.372±10.87 2.412±0.00 5.909±0.00 1.277±0.00
ENSMUST00000110189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.180±0.50
ENSMUST00000151143 N/A 4.300±0.58 N/A N/A N/A 13.110±0.00 N/A N/A N/A N/A N/A 5.508±0.00 N/A N/A
ENSMUST00000151627 2.403±0.96 1.651±0.05 N/A 5.800±0.65 1.448±0.00 4.949±0.45 2.745±0.20 N/A 0.259±0.00 N/A N/A 2.664±0.72 1.201±0.00 1.844±0.49
ENSMUST00000183947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.400±0.00 1.509±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068E CIL_00068E_0003 CGP 2:131298064-131525922
CIL_00037W CIL_00037W_0002 CGP 2:131491496-131562283

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006598 IEA polyamine catabolic process
GO:0046208 IDA:IEA spermine catabolic process
GO:0046592 IDA polyamine oxidase activity
GO:0052894 IEA norspermine:oxygen oxidoreductase activity
GO:0052895 IEA N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity
GO:0052901 IEA spermine:oxygen oxidoreductase (spermidine-forming) activity
GO:0055114 IDA:IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036967 smox spermine oxidase protein_coding Danio_rerio
ENSG00000088826 SMOX spermine oxidase protein_coding Homo_sapiens

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