C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00068E_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036965-ENSDARG00000036967 CGP 7955 1:42153362-42248506
GeneTranscriptPositionBiotype
ENSDARG00000036965 (rnf24)
ring finger protein 24 		ENSDART00000053681 (rnf24-001) 42153362-42200304 protein_coding
ENSDART00000131446 (rnf24-003) 42175821-42200301 retained_intron
ENSDART00000144098 (rnf24-002) 42165885-42200262 protein_coding
ENSDARG00000036967 (smox)
spermine oxidase 		ENSDART00000053685 (smox-001) 42231672-42248506 protein_coding
ENSDART00000124874 (smox-002) 42231793-42240269 retained_intron
ENSDART00000136879 (smox-004) 42231826-42241410 processed_transcript
ENSDART00000145170 (smox-003) 42231826-42241556 processed_transcript
ENSDART00000148388 (smox-005) 42231761-42242252 nonsense_mediated_decay

Danio rerio Ensembl (Zv9)

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CIL_00068E_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101236-ENSG00000088826 CGP 9606 20:3927309-4187747
GeneTranscriptPositionBiotype
ENSG00000101236 (RNF24)
ring finger protein 24 		ENST00000336095 (RNF24-001) 3927309-4015389 protein_coding
ENST00000358395 (RNF24-002) 3931421-4015582 protein_coding
ENST00000432261 (RNF24-201) 3931424-3974387 protein_coding
ENST00000545616 (RNF24-003) 3933567-4015545 protein_coding
ENSG00000125779 (PANK2)
pantothenate kinase 2 		ENST00000316562 (PANK2-007) 3889095-3923855 protein_coding
ENST00000336066 (PANK2-002) 3889389-3923855 nonsense_mediated_decay
ENST00000464452 (PANK2-005) 3908690-3917050 processed_transcript
ENST00000471830 (PANK2-004) 3891240-3910816 processed_transcript
ENST00000495692 (PANK2-003) 3888934-3918789 protein_coding
ENST00000497424 (PANK2-001) 3888839-3926958 protein_coding
ENST00000610179 (PANK2-008) 3889415-3923702 protein_coding
ENST00000619433 (PANK2-009) 3924818-3929873 processed_transcript
ENST00000621507 (PANK2-201) 3889816-3923855 protein_coding
ENST00000621891 (PANK2-010) 3929222-3929882 processed_transcript
ENSG00000205300 (RP11-352D3.2)
 ENST00000379526 (RP11-352D3.2-001) 4070152-4075165 lincRNA
ENSG00000215063 (RPL21P2)
ribosomal protein L21 pseudogene 2 		ENST00000440049 (RPL21P2-001) 4059633-4060113 processed_pseudogene
ENSG00000226608 (FTLP3)
ferritin, light polypeptide pseudogene 3 		ENST00000427242 (FTLP3-001) 4023917-4024444 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00068E_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048911-ENSMUSG00000027333 CGP 10090 2:131298064-131525922
GeneTranscriptPositionBiotype
ENSMUSG00000027333 (Smox)
spermine oxidase 		ENSMUST00000028806 (Smox-001) 131491764-131525183 protein_coding
ENSMUST00000110179 (Smox-003) 131491943-131525172 protein_coding
ENSMUST00000110180 (Smox-009) 131491993-131525167 protein_coding
ENSMUST00000110181 (Smox-010) 131491964-131525922 protein_coding
ENSMUST00000110182 (Smox-006) 131491943-131525172 protein_coding
ENSMUST00000110183 (Smox-007) 131491943-131525172 protein_coding
ENSMUST00000110186 (Smox-008) 131491943-131525172 protein_coding
ENSMUST00000110188 (Smox-011) 131491943-131525172 protein_coding
ENSMUST00000110189 (Smox-005) 131491943-131525172 protein_coding
ENSMUST00000129143 (Smox-012) 131491496-131520243 protein_coding
ENSMUST00000131698 (Smox-014) 131492264-131512177 protein_coding
ENSMUST00000149180 (Smox-015) 131508952-131512214 processed_transcript
ENSMUST00000151143 (Smox-017) 131521899-131525141 retained_intron
ENSMUST00000151627 (Smox-004) 131491943-131525172 retained_intron
ENSMUST00000183575 (Smox-013) 131491923-131520282 nonsense_mediated_decay
ENSMUST00000183881 (Smox-016) 131520186-131524879 nonsense_mediated_decay
ENSMUST00000183947 (Smox-002) 131491943-131525172 nonsense_mediated_decay
ENSMUSG00000037514 (Pank2)
pantothenate kinase 2 		ENSMUST00000131779 (Pank2-002) 131262495-131283437 processed_transcript
ENSMUST00000138509 (Pank2-005) 131262839-131296691 processed_transcript
ENSMUST00000145904 (Pank2-007) 131262796-131296331 protein_coding
ENSMUST00000150843 (Pank2-001) 131262500-131299188 protein_coding
ENSMUST00000183349 (Pank2-008) 131274185-131296308 nonsense_mediated_decay
ENSMUST00000183388 (Pank2-006) 131274077-131293457 nonsense_mediated_decay
ENSMUST00000184105 (Pank2-003) 131262525-131296488 nonsense_mediated_decay
ENSMUST00000184932 (Pank2-004) 131262568-131299186 nonsense_mediated_decay
ENSMUSG00000048911 (Rnf24)
ring finger protein 24 		ENSMUST00000059372 (Rnf24-001) 131298064-131352881 protein_coding
ENSMUST00000110194 (Rnf24-003) 131298067-131328988 protein_coding
ENSMUST00000142982 (Rnf24-004) 131312557-131352892 retained_intron
ENSMUST00000165420 (Rnf24-201) 131298065-131313314 protein_coding
ENSMUST00000183902 (Rnf24-002) 131302646-131352862 nonsense_mediated_decay
ENSMUSG00000081652 (Gm14283)
predicted gene 14283 		ENSMUST00000119763 (Gm14283-001) 131414921-131415245 processed_pseudogene
ENSMUSG00000082044 (Gm14284)
predicted gene 14284 		ENSMUST00000121967 (Gm14284-001) 131322088-131322366 processed_pseudogene
ENSMUSG00000083671 (Gm14304)
predicted gene 14304 		ENSMUST00000117272 (Gm14304-001) 131454128-131454640 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00068E_0001ENSDARG00000036965ENSDART00000053681ENSDART00000131446ENSDART00000144098ENSDARG00000036967ENSDART00000053685ENSDART00000124874ENSDART00000136879ENSDART00000145170ENSDART00000148388CIL_00068E_0002ENSG00000101236ENST00000336095ENST00000358395ENST00000432261ENST00000545616ENSG00000125779ENST00000316562ENST00000336066ENST00000464452ENST00000471830ENST00000495692ENST00000497424ENST00000610179ENST00000619433ENST00000621507ENST00000621891ENSG00000205300ENST00000379526ENSG00000215063ENST00000440049ENSG00000226608ENST00000427242CIL_00068E_0003ENSMUSG00000027333ENSMUST00000028806ENSMUST00000110179ENSMUST00000110180ENSMUST00000110181ENSMUST00000110182ENSMUST00000110183ENSMUST00000110186ENSMUST00000110188ENSMUST00000110189ENSMUST00000129143ENSMUST00000131698ENSMUST00000149180ENSMUST00000151143ENSMUST00000151627ENSMUST00000183575ENSMUST00000183881ENSMUST00000183947ENSMUSG00000037514ENSMUST00000131779ENSMUST00000138509ENSMUST00000145904ENSMUST00000150843ENSMUST00000183349ENSMUST00000183388ENSMUST00000184105ENSMUST00000184932ENSMUSG00000048911ENSMUST00000059372ENSMUST00000110194ENSMUST00000142982ENSMUST00000165420ENSMUST00000183902ENSMUSG00000081652ENSMUST00000119763ENSMUSG00000082044ENSMUST00000121967ENSMUSG00000083671ENSMUST00000117272
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00068E_0001ENSDARG00000036965ENSDART00000053681ENSDARG00000036967ENSDART00000053685ENSDART00000124874CIL_00068E_0002ENSG00000101236ENST00000336095ENST00000545616ENSG00000125779ENST00000316562ENST00000336066ENST00000495692ENST00000497424ENST00000610179ENST00000621507ENSG00000205300ENST00000379526ENSG00000215063ENST00000440049ENSG00000226608ENST00000427242CIL_00068E_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036965 ENSDART00000053681 N/A N/A N/A 9.908±0.00 N/A N/A 3.193±1.39 N/A N/A N/A 15.728±0.00 N/A N/A N/A
ENSDART00000131446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000144098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000036967 ENSDART00000053685 N/A N/A N/A 48.135±38.44 N/A N/A 31.030±24.18 41.016±18.71 1.214±0.00 N/A 87.140±0.00 N/A N/A N/A
ENSDART00000124874 N/A N/A N/A N/A N/A N/A N/A 1.128±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000136879 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101236 ENST00000336095 6.639±0.00 1.133±0.00 N/A 2.072±0.00 1.018±0.00 3.593±0.00 N/A 4.467±0.00 N/A 1.129±0.37 N/A 4.018±2.22 1.829±0.14 3.581±0.31
ENST00000358395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545616 N/A N/A N/A 9.017±0.00 N/A N/A N/A N/A N/A 4.273±0.00 0.319±0.00 4.931±0.00 N/A N/A
ENSG00000125779 ENST00000316562 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.291±0.00 N/A N/A N/A N/A
ENST00000336066 N/A N/A N/A 6.954±0.00 4.384±1.32 3.497±0.00 1.278±0.00 N/A 3.587±0.00 3.296±0.00 0.363±0.00 7.779±1.74 5.256±0.00 N/A
ENST00000464452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.931±0.00 N/A N/A 9.981±0.00
ENST00000497424 N/A N/A 0.634±0.00 3.233±0.00 1.420±0.44 0.693±0.00 1.052±0.00 1.415±1.00 N/A N/A N/A 2.666±0.82 N/A N/A
ENST00000610179 6.490±0.00 6.368±0.00 N/A 4.739±0.00 5.949±0.00 4.857±0.00 1.594±0.87 5.312±1.88 3.676±0.00 6.732±0.00 3.069±0.00 13.470±5.84 10.477±1.82 17.487±3.50
ENST00000619433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621507 N/A N/A N/A 4.381±0.00 2.120±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 8.262±0.00
ENST00000621891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000205300 ENST00000379526 0.046±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.213±0.00 N/A 0.063±0.00 N/A 0.112±0.00
ENSG00000215063 ENST00000440049 0.060±0.00 0.031±0.00 N/A 0.064±0.00 0.094±0.00 0.146±0.00 0.059±0.00 0.032±0.00 N/A 0.030±0.00 N/A N/A N/A 0.050±0.01
ENSG00000226608 ENST00000427242 4.812±0.00 2.757±0.00 0.127±0.00 1.060±0.00 4.458±0.00 2.490±0.00 0.503±0.00 3.194±0.00 6.262±0.00 8.509±0.00 1.295±0.00 0.881±0.60 0.805±0.38 0.591±0.42
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027333 ENSMUST00000028806 5.369±2.99 4.779±1.28 4.734±1.89 12.449±2.67 3.798±0.65 10.368±1.66 4.899±0.88 2.705±0.33 12.450±12.86 4.198±1.34 124.190±29.61 8.450±3.94 3.460±1.66 3.788±0.99
ENSMUST00000110179 N/A N/A N/A N/A N/A N/A N/A N/A 19.352±9.52 N/A N/A N/A N/A N/A
ENSMUST00000110180 N/A N/A N/A N/A N/A N/A N/A N/A 0.456±0.06 N/A N/A 3.863±0.87 6.068±0.00 N/A
ENSMUST00000110181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110186 3.178±0.75 2.471±0.87 1.976±0.31 8.126±0.00 3.008±0.51 9.004±1.83 2.794±0.83 1.604±0.20 7.618±7.28 4.222±0.36 N/A 6.073±1.23 5.295±3.77 1.076±0.46
ENSMUST00000110188 1.312±0.00 1.256±0.00 N/A N/A N/A N/A N/A N/A 0.403±0.00 N/A 55.372±10.87 2.412±0.00 5.909±0.00 1.277±0.00
ENSMUST00000110189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.180±0.50
ENSMUST00000129143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151143 N/A 4.300±0.58 N/A N/A N/A 13.110±0.00 N/A N/A N/A N/A N/A 5.508±0.00 N/A N/A
ENSMUST00000151627 2.403±0.96 1.651±0.05 N/A 5.800±0.65 1.448±0.00 4.949±0.45 2.745±0.20 N/A 0.259±0.00 N/A N/A 2.664±0.72 1.201±0.00 1.844±0.49
ENSMUST00000183575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.400±0.00 1.509±0.00 N/A
ENSMUSG00000037514 ENSMUST00000131779 N/A 14.493±4.51 N/A N/A 10.432±0.00 7.957±1.99 N/A N/A N/A N/A N/A 10.054±2.63 N/A N/A
ENSMUST00000138509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.622±0.56 7.492±0.00 4.255±0.00 N/A
ENSMUST00000145904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150843 N/A N/A 4.573±1.09 6.528±0.00 N/A 4.055±0.00 N/A N/A 2.613±1.88 N/A 1.580±0.67 5.462±1.08 3.857±0.00 5.132±1.39
ENSMUST00000183349 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.064±0.00
ENSMUST00000183388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184105 N/A 5.312±0.54 N/A 11.281±0.00 6.870±0.12 6.714±0.00 N/A N/A 2.159±0.00 7.350±0.00 N/A 6.656±0.00 9.144±2.61 15.874±0.00
ENSMUST00000184932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.483±0.00 N/A N/A N/A
ENSMUSG00000048911 ENSMUST00000059372 4.556±1.92 2.812±0.62 1.560±0.14 11.017±0.94 2.588±1.23 1.652±0.33 1.086±0.28 1.860±0.20 1.100±0.32 2.031±0.69 0.776±0.07 3.333±0.75 2.227±0.41 6.248±0.38
ENSMUST00000110194 N/A N/A N/A N/A N/A N/A N/A 5.323±1.39 N/A N/A N/A 2.122±0.00 N/A N/A
ENSMUST00000142982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165420 4.001±0.40 N/A 2.137±0.02 3.791±0.69 3.028±1.30 2.057±0.30 0.644±0.00 4.824±1.87 1.208±0.46 N/A 0.874±0.11 3.160±0.86 1.422±0.42 0.773±0.00
ENSMUST00000183902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.293±7.74
ENSMUSG00000081652 ENSMUST00000119763 0.237±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.304±0.00 N/A
ENSMUSG00000082044 ENSMUST00000121967 1.032±0.55 1.093±0.35 N/A 0.518±0.44 1.061±0.27 2.081±1.47 2.367±0.70 4.874±0.96 1.506±1.24 2.508±0.96 N/A 3.393±2.59 0.574±0.00 3.014±1.22
ENSMUSG00000083671 ENSMUST00000117272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A

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