C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histidine decarboxylase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027360 Hdc 10090 - 2:126593667-126619299 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028838 Hdc-001 126593667-126618678 protein_coding
  ENSMUST00000124396 Hdc-004 126594584-126598261 processed_transcript
  ENSMUST00000132382 Hdc-003 126604315-126607641 processed_transcript
  ENSMUST00000138752 Hdc-002 126600234-126618661 retained_intron
  ENSMUST00000148591 Hdc-005 126616173-126619299 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028838ENSMUST00000124396ENSMUST00000138752
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028838 18.225±17.12 5.025±1.11 0.089±0.05 0.564±0.08 1.139±0.32 0.307±0.09 0.561±0.21 4.259±1.01 2.354±2.03 34.448±0.60 0.105±0.03 62.451±20.14 0.547±0.48 6.433±2.47
ENSMUST00000124396 N/A N/A N/A 0.568±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138752 N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A 0.016±0.00 2.673±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E7 CIL_0002E7_0002 CGP 2:126552407-126619299
CIL_0002E6 CIL_0002E6_0002 CGP 2:126593667-126676337

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001694 IEA histamine biosynthetic process
GO:0004398 IMP histidine decarboxylase activity
GO:0006548 IMP histidine catabolic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0042423 IEA catecholamine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075454 hdc histidine decarboxylase protein_coding Danio_rerio
ENSG00000140287 HDC histidine decarboxylase protein_coding Homo_sapiens

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