C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histidine decarboxylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028838 Hdc-001 ENSMUSG00000027360 10090 - 2:126593667-126618678 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028838
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028838 18.225±17.12 5.025±1.11 0.089±0.05 0.564±0.08 1.139±0.32 0.307±0.09 0.561±0.21 4.259±1.01 2.354±2.03 34.448±0.60 0.105±0.03 62.451±20.14 0.547±0.48 6.433±2.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E7 CIL_0002E7_0002 CGP 2:126552407-126619299
CIL_0002E6 CIL_0002E6_0002 CGP 2:126593667-126676337

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001694 IEA histamine biosynthetic process
GO:0004398 IMP histidine decarboxylase activity
GO:0006548 IMP histidine catabolic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0042423 IEA catecholamine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267845 HDC-001 protein_coding Homo_sapiens 0 2049
ENST00000543581 HDC-004 protein_coding Homo_sapiens 0 1225
ENST00000558679 HDC-003 retained_intron Homo_sapiens 0 824
ENST00000558761 HDC-002 retained_intron Homo_sapiens 0 250
ENST00000559190 HDC-008 retained_intron Homo_sapiens 0 261
ENST00000559683 HDC-007 protein_coding Homo_sapiens 0 627
ENST00000559816 HDC-005 retained_intron Homo_sapiens 0 1149

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