C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GA repeat binding protein, beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103227 Gabpb1-003 ENSMUSG00000027361 10090 - 2:126628915-126675544 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverMuscleOvaryPlacentaTestisENSMUST00000103227
Transcript ID Adipose Adrenal Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000103227 0.798±0.10 1.432±0.00 1.609±0.02 1.011±0.16 0.877±0.00 0.845±0.30 0.666±0.26 1.965±0.41 1.913±0.06 2.632±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E6 CIL_0002E6_0002 CGP 2:126593667-126676337
CIL_00070V CIL_00070V_0002 CGP 2:126627442-126759297

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISO nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0044212 ISO transcription regulatory region DNA binding
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0046982 ISO protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220429 GABPB1-005 protein_coding Homo_sapiens 0 1382
ENST00000359031 GABPB1-201 protein_coding Homo_sapiens 0 1426
ENST00000380877 GABPB1-001 protein_coding Homo_sapiens 0 2237
ENST00000396464 GABPB1-002 protein_coding Homo_sapiens 0 1432
ENST00000429662 GABPB1-004 protein_coding Homo_sapiens 0 863
ENST00000543881 GABPB1-006 protein_coding Homo_sapiens 0 929
ENST00000558970 GABPB1-008 protein_coding Homo_sapiens 0 243
ENST00000559100 GABPB1-010 retained_intron Homo_sapiens 9.99967e-42 172
ENST00000560825 GABPB1-007 protein_coding Homo_sapiens 0 1441
ENST00000561010 GABPB1-012 protein_coding Homo_sapiens 0 577
ENST00000615671 GABPB1-011 processed_transcript Homo_sapiens 0 243

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