C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GA repeat binding protein, beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110424 Gabpb1-004 ENSMUSG00000027361 10090 - 2:126628913-126675502 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110424
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110424 2.112±0.61 3.159±0.79 3.752±0.66 1.932±0.40 1.208±0.24 1.782±0.30 2.605±0.48 3.117±2.01 4.168±0.90 1.221±0.38 2.940±1.82 4.542±0.99 1.833±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E6 CIL_0002E6_0002 CGP 2:126593667-126676337
CIL_00070V CIL_00070V_0002 CGP 2:126627442-126759297

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISO nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0044212 ISO transcription regulatory region DNA binding
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0046982 ISO protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220429 GABPB1-005 protein_coding Homo_sapiens 0 1382
ENST00000359031 GABPB1-201 protein_coding Homo_sapiens 0 1496
ENST00000380877 GABPB1-001 protein_coding Homo_sapiens 0 2414
ENST00000396464 GABPB1-002 protein_coding Homo_sapiens 0 1607
ENST00000429662 GABPB1-004 protein_coding Homo_sapiens 0 1040
ENST00000543881 GABPB1-006 protein_coding Homo_sapiens 0 929
ENST00000558970 GABPB1-008 protein_coding Homo_sapiens 4.2039e-45 185
ENST00000559100 GABPB1-010 retained_intron Homo_sapiens 9.99967e-42 172
ENST00000560825 GABPB1-007 protein_coding Homo_sapiens 0 1511
ENST00000561010 GABPB1-012 protein_coding Homo_sapiens 0 577
ENST00000615671 GABPB1-011 processed_transcript Homo_sapiens 4.06377e-44 185

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