C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) I polypeptide B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027395 Polr1b 10090 + 2:129100995-129126594 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028874 Polr1b-002 129101027-129120768 protein_coding
  ENSMUST00000103205 Polr1b-001 129100995-129126594 protein_coding
  ENSMUST00000133345 Polr1b-005 129115672-129118489 processed_transcript
  ENSMUST00000144004 Polr1b-004 129118654-129123138 processed_transcript
  ENSMUST00000147727 Polr1b-003 129121711-129123838 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028874ENSMUST00000103205ENSMUST00000144004
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00
ENSMUST00000103205 6.056±3.40 3.872±0.96 4.503±0.53 4.889±1.85 4.270±1.32 4.282±1.06 2.301±0.11 4.415±0.74 4.647±2.36 3.715±0.66 3.294±0.17 6.192±1.91 4.499±2.27 1.227±0.11
ENSMUST00000144004 N/A 4.657±0.45 N/A N/A 5.526±0.49 4.820±0.83 N/A N/A 4.717±0.00 3.541±0.62 N/A 8.561±0.80 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047U CIL_00047U_0002 CGP 2:129065942-129126594
CIL_00018Y CIL_00018Y_0002 CGP 2:129100995-129134134

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005736 IDA DNA-directed RNA polymerase I complex
GO:0005737 IEA cytoplasm
GO:0007566 IMP embryo implantation
GO:0009303 IMP rRNA transcription
GO:0017126 IMP nucleologenesis
GO:0032549 IEA ribonucleoside binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077469 polr1b polymerase (RNA) I polypeptide B protein_coding Danio_rerio
ENSG00000125630 POLR1B polymerase (RNA) I polypeptide B, 128kDa protein_coding Homo_sapiens

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