C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103205 Polr1b-001 ENSMUSG00000027395 10090 + 2:129100995-129126594 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103205
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103205 6.056±3.40 3.872±0.96 4.503±0.53 4.889±1.85 4.270±1.32 4.282±1.06 2.301±0.11 4.415±0.74 4.647±2.36 3.715±0.66 3.294±0.17 6.192±1.91 4.499±2.27 1.227±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047U CIL_00047U_0002 CGP 2:129065942-129126594
CIL_00018Y CIL_00018Y_0002 CGP 2:129100995-129134134

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005736 IDA DNA-directed RNA polymerase I complex
GO:0005737 IEA cytoplasm
GO:0007566 IMP embryo implantation
GO:0009303 IMP rRNA transcription
GO:0017126 IMP nucleologenesis
GO:0032549 IEA ribonucleoside binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263331 POLR1B-001 protein_coding Homo_sapiens 0 3478
ENST00000333990 POLR1B-002 nonsense_mediated_decay Homo_sapiens 0 3308
ENST00000409894 POLR1B-003 protein_coding Homo_sapiens 0 1735
ENST00000417433 POLR1B-005 protein_coding Homo_sapiens 0 3133
ENST00000424062 POLR1B-009 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000430293 POLR1B-008 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000430769 POLR1B-006 protein_coding Homo_sapiens 0 350
ENST00000438748 POLR1B-007 protein_coding Homo_sapiens 0 390
ENST00000448770 POLR1B-004 nonsense_mediated_decay Homo_sapiens 0 1831
ENST00000458012 POLR1B-015 protein_coding Homo_sapiens 0 569
ENST00000468475 POLR1B-011 retained_intron Homo_sapiens 0 531
ENST00000475318 POLR1B-012 retained_intron Homo_sapiens 0 464
ENST00000484574 POLR1B-014 retained_intron Homo_sapiens 0 527
ENST00000496238 POLR1B-010 processed_transcript Homo_sapiens 0 357
ENST00000498054 POLR1B-013 processed_transcript Homo_sapiens 0 324
ENST00000537335 POLR1B-201 protein_coding Homo_sapiens 0 2809
ENST00000541869 POLR1B-202 protein_coding Homo_sapiens 0 3478

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