C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00018Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125630-ENSG00000125611 CGP 9606 2:112541915-112589275
GeneTranscriptPositionBiotype
ENSG00000125611 (CHCHD5)
coiled-coil-helix-coiled-coil-helix domain containing 5 		ENST00000324913 (CHCHD5-001) 112584441-112589040 protein_coding
ENST00000409719 (CHCHD5-003) 112584595-112589275 protein_coding
ENST00000454841 (CHCHD5-002) 112584469-112589040 nonsense_mediated_decay
ENST00000469030 (CHCHD5-005) 112584872-112589040 processed_transcript
ENST00000489052 (CHCHD5-004) 112584240-112586365 processed_transcript
ENSG00000125630 (POLR1B)
polymerase (RNA) I polypeptide B, 128kDa 		ENST00000263331 (POLR1B-001) 112541915-112576299 protein_coding
ENST00000333990 (POLR1B-002) 112542189-112576299 nonsense_mediated_decay
ENST00000409894 (POLR1B-003) 112542226-112577058 protein_coding
ENST00000417433 (POLR1B-005) 112542465-112576295 protein_coding
ENST00000424062 (POLR1B-009) 112542450-112549358 nonsense_mediated_decay
ENST00000430293 (POLR1B-008) 112542419-112551979 nonsense_mediated_decay
ENST00000430769 (POLR1B-006) 112542036-112547176 protein_coding
ENST00000438748 (POLR1B-007) 112542019-112547461 protein_coding
ENST00000448770 (POLR1B-004) 112542274-112576029 nonsense_mediated_decay
ENST00000458012 (POLR1B-015) 112564362-112575089 protein_coding
ENST00000468475 (POLR1B-011) 112546934-112550908 retained_intron
ENST00000475318 (POLR1B-012) 112550707-112552804 retained_intron
ENST00000484574 (POLR1B-014) 112564314-112572598 retained_intron
ENST00000496238 (POLR1B-010) 112542675-112549360 processed_transcript
ENST00000498054 (POLR1B-013) 112553385-112559395 processed_transcript
ENST00000537335 (POLR1B-201) 112541915-112577150 protein_coding
ENST00000541869 (POLR1B-202) 112542036-112577150 protein_coding
ENSG00000207383 (Y_RNA)
Y RNA 		ENST00000384653 (Y_RNA.1-748) 112579484-112579584 misc_RNA
ENSG00000243389 (AC012442.5)
 ENST00000414784 (AC012442.5-001) 112589040-112614431 3prime_overlapping_ncrna
CIL_00018Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027395-ENSMUSG00000037938 CGP 10090 2:129100995-129134134
GeneTranscriptPositionBiotype
ENSMUSG00000027395 (Polr1b)
polymerase (RNA) I polypeptide B 		ENSMUST00000028874 (Polr1b-002) 129101027-129120768 protein_coding
ENSMUST00000103205 (Polr1b-001) 129100995-129126594 protein_coding
ENSMUST00000133345 (Polr1b-005) 129115672-129118489 processed_transcript
ENSMUST00000144004 (Polr1b-004) 129118654-129123138 processed_transcript
ENSMUST00000147727 (Polr1b-003) 129121711-129123838 processed_transcript
ENSMUSG00000037938 (Chchd5)
coiled-coil-helix-coiled-coil-helix domain containing 5 		ENSMUST00000035481 (Chchd5-001) 129129700-129134134 protein_coding
ENSMUST00000137881 (Chchd5-002) 129129850-129133480 retained_intron
ENSMUST00000149118 (Chchd5-003) 129129804-129134013 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00018Y_0001ENSG00000125611ENST00000324913ENST00000409719ENST00000454841ENST00000469030ENST00000489052ENSG00000125630ENST00000263331ENST00000333990ENST00000409894ENST00000417433ENST00000424062ENST00000430293ENST00000430769ENST00000438748ENST00000448770ENST00000458012ENST00000468475ENST00000475318ENST00000484574ENST00000496238ENST00000498054ENST00000537335ENST00000541869ENSG00000207383ENST00000384653ENSG00000243389ENST00000414784CIL_00018Y_0002ENSMUSG00000027395ENSMUST00000028874ENSMUST00000103205ENSMUST00000133345ENSMUST00000144004ENSMUST00000147727ENSMUSG00000037938ENSMUST00000035481ENSMUST00000137881ENSMUST00000149118
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00018Y_0001ENSG00000125611ENST00000324913ENST00000409719ENST00000469030ENST00000489052ENSG00000125630ENST00000263331ENST00000333990ENST00000409894ENST00000417433ENST00000448770ENST00000458012ENST00000484574ENST00000537335ENST00000541869ENSG00000207383ENST00000384653ENSG00000243389ENST00000414784CIL_00018Y_0002ENSMUSG00000027395ENSMUST00000028874ENSMUST00000103205ENSMUST00000144004ENSMUSG00000037938ENSMUST00000035481ENSMUST00000137881ENSMUST00000149118
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125611 ENST00000324913 5.413±0.00 10.127±0.00 0.225±0.00 5.975±5.45 8.912±0.00 4.531±3.13 8.484±0.00 12.382±0.00 12.084±0.00 7.838±0.00 5.499±0.00 12.605±8.39 5.659±3.06 16.947±0.00
ENST00000409719 N/A N/A 0.026±0.00 N/A 0.041±0.00 0.168±0.00 N/A N/A N/A N/A N/A 0.240±0.22 N/A N/A
ENST00000454841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469030 17.773±0.00 13.799±0.00 N/A 0.212±0.00 9.270±7.95 5.594±0.00 1.098±0.00 4.950±4.09 3.675±2.75 6.864±0.00 11.236±0.00 9.239±5.88 13.580±4.86 22.958±0.00
ENST00000489052 N/A N/A 0.138±0.00 0.213±0.00 N/A N/A N/A N/A N/A 2.915±0.00 N/A N/A 2.447±0.00 15.087±0.00
ENSG00000125630 ENST00000263331 N/A N/A N/A N/A N/A N/A N/A N/A 0.366±0.00 N/A N/A 1.580±0.00 0.887±0.00 2.030±0.00
ENST00000333990 N/A 1.868±0.00 N/A N/A N/A N/A 0.203±0.05 N/A N/A N/A N/A N/A N/A N/A
ENST00000409894 N/A N/A 0.324±0.00 0.550±0.00 N/A 0.345±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417433 0.398±0.00 0.880±0.00 N/A 0.639±0.00 1.041±0.53 1.436±0.41 0.735±0.00 3.749±0.00 1.178±0.71 0.914±0.00 2.724±0.00 1.963±0.25 0.972±0.35 1.876±0.00
ENST00000424062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448770 0.600±0.00 1.600±0.00 0.763±0.00 N/A 3.424±0.00 N/A 0.554±0.00 1.786±0.19 1.199±0.20 1.000±0.07 1.164±0.00 4.185±1.66 1.417±0.72 9.035±2.45
ENST00000458012 N/A N/A 2.335±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484574 N/A N/A N/A N/A N/A 3.532±0.00 N/A N/A N/A N/A 1.362±0.00 N/A N/A N/A
ENST00000496238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.266±0.00
ENST00000541869 0.799±0.00 N/A N/A 0.300±0.00 N/A N/A 0.088±0.00 N/A N/A 0.763±0.00 N/A 1.595±0.60 0.832±0.00 N/A
ENSG00000207383 ENST00000384653 0.571±0.00 0.572±0.00 N/A N/A 0.729±0.00 2.050±0.00 0.162±0.00 2.511±0.00 1.284±0.00 N/A N/A 3.681±0.00 N/A 0.838±0.00
ENSG00000243389 ENST00000414784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.833±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027395 ENSMUST00000028874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00
ENSMUST00000103205 6.056±3.40 3.872±0.96 4.503±0.53 4.889±1.85 4.270±1.32 4.282±1.06 2.301±0.11 4.415±0.74 4.647±2.36 3.715±0.66 3.294±0.17 6.192±1.91 4.499±2.27 1.227±0.11
ENSMUST00000133345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144004 N/A 4.657±0.45 N/A N/A 5.526±0.49 4.820±0.83 N/A N/A 4.717±0.00 3.541±0.62 N/A 8.561±0.80 N/A N/A
ENSMUST00000147727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037938 ENSMUST00000035481 11.652±0.82 48.262±3.57 8.193±0.67 6.971±2.60 15.017±5.45 19.954±5.68 7.794±1.59 18.852±0.49 16.116±8.53 10.986±0.63 4.188±0.54 18.973±7.13 9.214±2.30 6.451±2.67
ENSMUST00000137881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.744±0.00 N/A
ENSMUST00000149118 N/A N/A N/A N/A 7.946±0.00 N/A N/A N/A N/A N/A N/A 3.502±0.00 N/A N/A

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