C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transglutaminase 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027403 Tgm6 10090 + 2:130112416-130154232 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028888 Tgm6-001 130123275-130154232 protein_coding
  ENSMUST00000140947 Tgm6-003 130112416-130154232 processed_transcript
  ENSMUST00000147616 Tgm6-002 130123275-130154232 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000028888ENSMUST00000140947ENSMUST00000147616
Transcript ID Adipose Bladder Brain Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028888 N/A 0.035±0.00 N/A N/A N/A N/A 0.039±0.00 N/A 0.180±0.00 0.028±0.00
ENSMUST00000140947 0.026±0.00 N/A 0.027±0.00 N/A N/A N/A 0.037±0.00 0.035±0.00 0.041±0.03 0.067±0.04
ENSMUST00000147616 0.012±0.00 N/A 0.088±0.00 0.017±0.00 0.021±0.00 0.028±0.00 N/A 0.037±0.03 0.052±0.04 0.184±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FU CIL_0000FU_0002 CGP 2:130012349-130154232
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FT CIL_0000FT_0002 CGP 2:130112416-130179403

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0008150 ND biological_process
GO:0018149 IEA peptide cross-linking
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074155 tgm5l transglutaminase 5, like protein_coding Danio_rerio
ENSDARG00000097651 tgm8 transglutaminase 8 protein_coding Danio_rerio
ENSG00000166948 TGM6 transglutaminase 6 protein_coding Homo_sapiens

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