C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147570 Snrpb-002 ENSMUSG00000027404 10090 - 2:130171787-130179403 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryENSMUST00000147570
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000147570 84.935±25.26 69.927±11.38 48.099±10.02 26.006±0.00 13.936±5.30 68.866±8.77 108.013±49.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FT CIL_0000FT_0002 CGP 2:130112416-130179403

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339610 SNRPB-201 protein_coding Homo_sapiens 0 821
ENST00000381342 SNRPB-001 protein_coding Homo_sapiens 0 828
ENST00000438552 SNRPB-002 protein_coding Homo_sapiens 0 732
ENST00000461548 RP4-734P14.4-001 nonsense_mediated_decay Homo_sapiens 0 392
ENST00000474384 SNRPB-003 nonsense_mediated_decay Homo_sapiens 0 1210

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