C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103199 Snrpb-001 ENSMUSG00000027404 10090 - 2:130171635-130179403 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103199
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103199 81.036±11.46 98.530±23.60 107.802±23.48 151.944±55.65 79.301±26.86 81.067±15.40 49.774±11.84 84.852±7.09 98.631±62.24 100.599±6.53 81.073±5.61 151.934±67.63 224.504±242.61 59.889±18.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FT CIL_0000FT_0002 CGP 2:130112416-130179403

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005683 ISS U7 snRNP
GO:0005685 ISS U1 snRNP
GO:0005687 ISS U4 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0034709 ISS methylosome
GO:0034719 ISS SMN-Sm protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome
GO:0071204 IDA histone pre-mRNA 3'end processing complex
GO:0071208 IDA histone pre-mRNA DCP binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339610 SNRPB-201 protein_coding Homo_sapiens 0 1229
ENST00000381342 SNRPB-001 protein_coding Homo_sapiens 0 1243
ENST00000438552 SNRPB-002 protein_coding Homo_sapiens 0 1033
ENST00000461548 RP4-734P14.4-001 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000474384 SNRPB-003 nonsense_mediated_decay Homo_sapiens 0 732

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