C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) III (DNA directed) polypeptide F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028914 Polr3f-001 ENSMUSG00000027427 10090 + 2:144527718-144541995 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028914
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028914 0.901±0.38 0.832±0.47 4.950±0.10 4.948±2.62 0.967±0.00 0.824±0.27 0.913±0.46 1.477±0.60 3.113±1.41 1.502±0.51 1.962±0.33 3.638±1.70 4.209±0.89 1.350±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MW CIL_0002MW_0002 CGP 2:144470557-144541995
CIL_0002MV CIL_0002MV_0002 CGP 2:144527718-144550869

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0006383 IBA transcription from RNA polymerase III promoter
GO:0032728 ISS positive regulation of interferon-beta production
GO:0045087 IEA innate immune response
GO:0045089 ISS positive regulation of innate immune response
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377603 POLR3F-001 protein_coding Homo_sapiens 0 1358
ENST00000462997 POLR3F-002 processed_transcript Homo_sapiens 0 1258
ENST00000489753 POLR3F-005 processed_transcript Homo_sapiens 0 660

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