C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA synthetase short-chain family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028944 Acss1-001 ENSMUSG00000027452 10090 - 2:150618105-150668258 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028944
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028944 6.021±1.14 4.893±1.22 2.895±0.17 6.660±2.18 9.543±2.65 27.225±1.84 90.655±7.06 131.450±13.04 15.477±14.57 20.967±2.03 7.239±1.34 7.681±2.15 6.280±6.86 3.882±0.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023H CIL_00023H_0002 CGP 2:150583080-150668500
CIL_00023G CIL_00023G_0002 CGP 2:150618105-150689360

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003987 ISS acetate-CoA ligase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0005759 ISS mitochondrial matrix
GO:0006085 ISS acetyl-CoA biosynthetic process
GO:0016208 IEA AMP binding
GO:0019413 IEA acetate biosynthetic process
GO:0019427 IEA acetyl-CoA biosynthetic process from acetate
GO:0019542 IEA propionate biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323482 ACSS1-001 protein_coding Homo_sapiens 0 1997
ENST00000376726 ACSS1-002 protein_coding Homo_sapiens 0 309
ENST00000432802 ACSS1-201 protein_coding Homo_sapiens 0 1694
ENST00000537502 ACSS1-202 protein_coding Homo_sapiens 0 1690

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