C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: replication termination factor 2 domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027502 Rtfdc1 10090 + 2:172440556-172469908 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029005 Rtfdc1-001 172440556-172469908 protein_coding
  ENSMUST00000109132 Rtfdc1-003 172440602-172466654 retained_intron
  ENSMUST00000140048 Rtfdc1-002 172452977-172469908 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029005ENSMUST00000109132ENSMUST00000140048
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029005 38.896±9.78 20.871±2.48 32.199±3.08 20.162±6.76 33.322±4.47 19.649±1.72 10.670±0.70 19.469±0.52 20.532±2.39 26.465±0.94 17.738±1.04 24.496±5.49 30.924±11.87 11.855±0.45
ENSMUST00000109132 N/A N/A N/A 109.184±0.00 N/A N/A N/A N/A N/A N/A N/A 142.885±0.00 103.596±95.37 97.614±0.00
ENSMUST00000140048 N/A 2.148±0.00 N/A N/A N/A 2.898±0.00 N/A N/A N/A N/A N/A 2.843±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099D CIL_00099D_0002 VISTA 2:172130534-172731364
CIL_00036G CIL_00036G_0002 CGP 2:172393794-172469908
CIL_00015M CIL_00015M_0003 CGP 2:172440556-172469908

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040607 rtfdc1 replication termination factor 2 domain containing 1 protein_coding Danio_rerio
ENSG00000022277 RTFDC1 replication termination factor 2 domain containing 1 protein_coding Homo_sapiens

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