C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: replication termination factor 2 domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000022277 RTFDC1 9606 + 20:56468585-56519449 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000023939 RTFDC1-201 56468585-56518886 protein_coding
  ENST00000357348 RTFDC1-001 56468591-56519449 protein_coding
  ENST00000395881 RTFDC1-004 56468614-56518887 protein_coding
  ENST00000449062 RTFDC1-006 56468678-56517201 protein_coding
  ENST00000466260 RTFDC1-007 56468686-56477032 processed_transcript
  ENST00000477485 RTFDC1-008 56513391-56518245 retained_intron
  ENST00000477573 RTFDC1-003 56515694-56518887 retained_intron
  ENST00000484084 RTFDC1-005 56468658-56473360 processed_transcript
  ENST00000487211 RTFDC1-002 56468679-56474759 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000023939ENST00000357348ENST00000395881ENST00000449062
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000023939 N/A 8.368±0.00 N/A N/A 9.077±0.00 6.743±0.00 12.260±0.00 12.478±10.60 12.523±0.00 19.836±0.00 18.847±0.00 29.347±1.09 29.903±2.79 10.218±0.00
ENST00000357348 N/A N/A 0.589±0.00 6.312±0.00 2.406±0.00 N/A 1.388±0.00 N/A 2.954±0.00 1.881±0.00 3.366±0.00 2.262±0.00 N/A N/A
ENST00000395881 36.384±0.00 38.710±0.00 2.933±0.00 32.224±23.22 20.612±16.15 25.279±17.08 10.682±6.65 16.507±10.33 10.580±3.65 12.102±7.47 19.420±15.59 30.180±13.95 34.235±9.73 39.058±4.80
ENST00000449062 22.324±0.00 15.736±0.00 2.460±0.00 21.886±14.17 9.918±2.49 11.851±6.55 2.457±0.00 7.116±0.00 6.527±0.00 4.627±0.00 N/A 17.964±8.10 30.568±0.00 14.712±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099D CIL_00099D_0001 VISTA 20:56155251-56756351
CIL_00036G CIL_00036G_0001 CGP 20:56412112-56519449
CIL_00015M CIL_00015M_0002 CGP 20:56468585-56525925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040607 rtfdc1 replication termination factor 2 domain containing 1 protein_coding Danio_rerio
ENSMUSG00000027502 Rtfdc1 replication termination factor 2 domain containing 1 protein_coding Mus_musculus

Loading