C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sal-like 4 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027547 Sall4 10090 - 2:168748332-168767943 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029061 Sall4-001 168748332-168767201 protein_coding
  ENSMUST00000075044 Sall4-005 168748332-168767029 protein_coding
  ENSMUST00000103074 Sall4-002 168748332-168767201 protein_coding
  ENSMUST00000125138 Sall4-007 168756614-168767943 processed_transcript
  ENSMUST00000130640 Sall4-003 168756753-168767117 processed_transcript
  ENSMUST00000137536 Sall4-004 168756181-168765246 protein_coding
  ENSMUST00000150588 Sall4-006 168754915-168755943 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029061ENSMUST00000075044ENSMUST00000103074ENSMUST00000125138ENSMUST00000137536ENSMUST00000150588
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029061 N/A N/A 0.160±0.00 0.013±0.00 0.041±0.02 N/A 0.612±0.25 0.006±0.00 N/A 0.627±0.43 1.072±1.02 0.015±0.00
ENSMUST00000075044 0.014±0.00 0.023±0.00 0.052±0.05 0.053±0.03 0.035±0.01 0.014±0.00 N/A N/A 0.240±0.00 0.134±0.00 0.270±0.02 0.021±0.00
ENSMUST00000103074 N/A 0.027±0.00 N/A 0.047±0.00 N/A N/A 0.275±0.03 N/A N/A 0.217±0.17 0.315±0.10 N/A
ENSMUST00000125138 N/A 0.388±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137536 N/A N/A 0.066±0.00 0.093±0.00 0.043±0.00 N/A N/A N/A N/A 0.208±0.00 2.330±0.00 N/A
ENSMUST00000150588 N/A N/A N/A 0.566±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007I5 CIL_0007I5_0002 CGP 2:168634438-168767943
CIL_0001H1 CIL_0001H1_0002 CGP 2:168748332-168955587

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IDA heterochromatin
GO:0001701 IMP in utero embryonic development
GO:0001833 IMP inner cell mass cell proliferation
GO:0001843 IGI neural tube closure
GO:0003281 IGI ventricular septum development
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IC transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IMP heart development
GO:0009888 IMP tissue development
GO:0019827 IMP stem cell maintenance
GO:0021915 IGI neural tube development
GO:0030326 IGI embryonic limb morphogenesis
GO:0043234 IDA protein complex
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044485 sall4 sal-like 4 (Drosophila) protein_coding Danio_rerio
ENSG00000101115 SALL4 spalt-like transcription factor 4 protein_coding Homo_sapiens

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