C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sal-like 4 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029061 Sall4-001 ENSMUSG00000027547 10090 - 2:168748332-168767201 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000029061
Transcript ID Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000029061 0.160±0.00 0.013±0.00 0.041±0.02 0.612±0.25 0.006±0.00 0.627±0.43 1.072±1.02 0.015±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007I5 CIL_0007I5_0002 CGP 2:168634438-168767943
CIL_0001H1 CIL_0001H1_0002 CGP 2:168748332-168955587

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IDA heterochromatin
GO:0001701 IMP in utero embryonic development
GO:0001833 IMP inner cell mass cell proliferation
GO:0001843 IGI neural tube closure
GO:0003281 IGI ventricular septum development
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IC transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IMP heart development
GO:0009888 IMP tissue development
GO:0019827 IMP stem cell maintenance
GO:0021915 IGI neural tube development
GO:0030326 IGI embryonic limb morphogenesis
GO:0043234 IDA protein complex
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111842 sall1a-001 protein_coding Danio_rerio 4e-38 165
ENST00000217086 SALL4-001 protein_coding Homo_sapiens 0 2109
ENST00000371539 SALL4-201 protein_coding Homo_sapiens 0 215
ENST00000395997 SALL4-002 protein_coding Homo_sapiens 0 760
ENST00000423288 SALL4P2-001 processed_pseudogene Homo_sapiens 0 231
ENST00000481363 SALL4-004 processed_transcript Homo_sapiens 0 191
ENST00000483130 SALL4-003 processed_transcript Homo_sapiens 0 217
ENST00000510352 SALL4P1-001 processed_pseudogene Homo_sapiens 0 494
ENST00000555779 SALL4P7-001 transcribed_processed_pseudogene Homo_sapiens 0 300

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